Rw2G040230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000181
Physical Location & Seq
Reverse (-)
65724741 .. 65726236
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040230.1

Sequence Viewer

Length: 576 bp
ATGTCTCTTGTCGAATCAGGATTCTCCAAGGAACCGAACCTGAACCAGGTCCCGCCGGAGGAGGACGACAAGATCCAGACTGATGGAAAGCACAAGGTTGCTGAAGACTCTCTATCTCAACTTGAAGTAGAGGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGATGCAGAGGGAGAAGGAGAAGAAGAAGAAGAAGCAGAAGAAGAATTTGAGATGTGTGATGTTTGTTTGAAGGACAAGGAACACTGGACAGATGAATGCCCGTACTTGGTTCGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGCTATGAGTTAGTTTGTGCGCACTGTAATGTGAAGGGTGGCCACTCTGATATAGTCGGTACACAATGTAATTGGTGGGGTGGCAACCCTAATAGGAGGTGGGAAGGACGTGCTATTATCAAGGTTTGTGGTATTTGTGAGGGCGTATTCCACTGGTCTGCAGAGTGCCCAAAGAAGGACTTATTACCAAAGCCAAAGAGTCTGTTGGAGTGTGCTGCTGAGTATCGCTCTTGGTTGGCTACCAAAAAATGTCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.62

Weight (kDa)

4.38

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 269, 373
AfiI CCNNNNNNNGG 4 cut(s) 46, 58, 271, 487
AgsI TTSAA 2 cut(s) 125, 235
AjiI CACGTC 1 cut(s) 422
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 1 cut(s) 569
AluI AGCT 1 cut(s) 569
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 67
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 527, 569
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 49
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 482
BalI TGGCCA 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 514, 556
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 471
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 2 cut(s) 528, 570
BlsI GCNGC 2 cut(s) 529, 571
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 33, 51
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 58, 271, 487
Bse1I ACTGG 2 cut(s) 254, 470
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 4 cut(s) 46, 58, 271, 487
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 254, 470
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 2 cut(s) 514, 556
BshFI GGCC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 4 cut(s) 46, 58, 271, 487
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 33, 51
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 1 cut(s) 67
BsrI ACTGG 2 cut(s) 254, 470
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 531
BstENI CCTNNNNNAGG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 482
BstV1I GCAGC 2 cut(s) 514, 556
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 1 cut(s) 72
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 354
BtrI CACGTC 1 cut(s) 422
BtsIMutI CAGTG 3 cut(s) 247, 334, 463
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 49
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 2 cut(s) 268, 372
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviJI RGCY 5 cut(s) 315, 354, 505, 551, 569
CviKI_1 RGCY 5 cut(s) 315, 354, 505, 551, 569
CviQI GTAC 2 cut(s) 268, 372
DdeI CTNAG 1 cut(s) 531
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaiI YATR 2 cut(s) 318, 365
FalI AAGNNNNNCTT 4 cut(s) 288, 320, 476, 508
FaqI GGGAC 1 cut(s) 35
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 528, 570
Fsp4HI GCNGC 2 cut(s) 528, 570
FspAI RTGCGCAY 1 cut(s) 333
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 1 cut(s) 333
GluI GCNGC 2 cut(s) 528, 570
HaeIII GGCC 1 cut(s) 354
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 334
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 4 cut(s) 14, 21, 107, 511
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 1 cut(s) 361
Hpy188III TCNNGA 2 cut(s) 18, 76
Hpy8I GTNNAC 1 cut(s) 374
HpyAV CCTTC 5 cut(s) 173, 229, 340, 410, 481
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 2 cut(s) 170, 473
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 1 cut(s) 421
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 72
LpnPI CCDG 8 cut(s) 3, 32, 53, 59, 69, 89, 235, 451
Lsp1109I GCAGC 2 cut(s) 514, 556
LweI GCATC 1 cut(s) 157
MabI ACCWGGT 1 cut(s) 45
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 482
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 2 cut(s) 209, 382
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 2 cut(s) 101, 520
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 7 cut(s) 52, 55, 124, 133, 166, 402, 445
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 354
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 1 cut(s) 47
NdeII GATC 1 cut(s) 72
NlaIV GGNNCC 2 cut(s) 33, 51
NsbI TGCGCA 1 cut(s) 333
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 14, 21
PkrI GCNGC 2 cut(s) 529, 571
PleI GAGTC 2 cut(s) 101, 519
PpsI GAGTC 2 cut(s) 101, 519
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 33, 51
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 72
RsaI GTAC 2 cut(s) 269, 373
RsaNI GTAC 2 cut(s) 268, 372
RseI CAYNNNNRTG 1 cut(s) 339
SatI GCNGC 2 cut(s) 528, 570
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 2 cut(s) 101, 520
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 482
SetI ASST 7 cut(s) 42, 51, 99, 413, 424, 438, 571
SexAI ACCWGGT 1 cut(s) 45
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 2 cut(s) 209, 382
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 424
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 209, 382
TfiI GAWTC 2 cut(s) 14, 21
TscAI CASTG 3 cut(s) 254, 341, 470
TseI GCWGC 2 cut(s) 527, 569
TspDTI ATGAA 4 cut(s) 165, 171, 177, 273
TspRI CASTG 3 cut(s) 254, 341, 470
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.