Prupe.1G187100_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000181
Physical Location & Seq
Forward (+)
17090015 .. 17092542
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G187100.1

Sequence Viewer

Length: 621 bp
ATGGACCACGTCACATCTTCAGAGTGCCTGAAACTGGATTCTCAGTTGGAGGTGCTCGATAAGGATGGCGGCCGAAAGGACCTTTTCTCGCCAGTTATGGTCCCCTCTAACTGCAATACGCCAATAATCGATAGCAAAGTTGAAGAACCAAAGACTACAATATTGGATGAAGACCTTGAGATTTATTTTTCTCTGCACTGGGGCCCTCCTAGTCCTACTCGTATTGGTAGCAAAGATGAAGAACCAAAGATTGAAGAACTAATGGATGAAGAACTAGAGACTGAAGAACCAATGTCCGAAATTGGTGAATGTAAGTATTGTTTAAAAGTGGATAAACACTATATGCCACTATGCCCTTATAGGTATCATCTCCCAAAGAATGCAACTCTCGGCAGCGGTGTTGAGGTAATTTGTAAGATTTGCGGATGCCTCTTTAGAGGCTCCTGTTGTGCCAGTTGTGGCCTAAGCGAAGGACAAGCACTTCTCAAGGATTGTTCAATTTGTGGAAAGCAAGGTGAACACTGGCCTTCTACTTGCCCGAGCCGCGAGGGGAGACATATTCCTTCTGCTTTTACTTGCGACGATTATACTGGTTATTTTTCTATCAACATTTGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.95

Weight (kDa)

4.75

Isoelectric Point (pI)

66.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 546
AciI CCGC 4 cut(s) 69, 396, 423, 544
AcoI YGGCCR 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 143, 254, 498
AjiI CACGTC 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 272, 547
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 4 cut(s) 70, 202, 460, 524
ApaI GGGCCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 393
AspS9I GGNCC 5 cut(s) 4, 79, 100, 202, 203
AsuHPI GGTGA 2 cut(s) 317, 527
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 3 cut(s) 4, 79, 100
BaeGI GKGCMC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 405
BccI CCATC 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 272, 547
BfaI CTAG 2 cut(s) 210, 275
BisI GCNGC 3 cut(s) 70, 394, 544
BlsI GCNGC 3 cut(s) 71, 395, 545
Bme18I GGWCC 3 cut(s) 4, 79, 100
BmeT110I CYCGRG 1 cut(s) 538
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 5 cut(s) 4, 79, 100, 202, 203
BmiI GGNNCC 4 cut(s) 102, 203, 204, 442
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 416
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 464
BpuEI CTTGAG 2 cut(s) 197, 470
Bsa29I ATCGAT 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 6 cut(s) 39, 92, 203, 453, 527, 595
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 4 cut(s) 70, 172, 271, 431
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 6 cut(s) 39, 92, 203, 453, 527, 595
BseSI GKGCMC 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 546
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 4 cut(s) 72, 204, 462, 526
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 538
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 272, 547
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 4 cut(s) 72, 204, 462, 526
BsoBI CYCGRG 1 cut(s) 538
Bsp120I GGGCCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 57, 206
BspACI CCGC 4 cut(s) 69, 396, 423, 544
BspANI GGCC 4 cut(s) 72, 204, 462, 526
BspCNI CTCAG 1 cut(s) 55
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 546
BspLI GGNNCC 4 cut(s) 102, 203, 204, 442
BsrI ACTGG 6 cut(s) 39, 92, 203, 453, 527, 595
BstDEI CTNAG 2 cut(s) 42, 464
BstF5I GGATG 4 cut(s) 70, 172, 271, 431
BstFNI CGCG 1 cut(s) 546
BstMAI GTCTC 2 cut(s) 272, 547
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 405
BstV2I GAAGAC 1 cut(s) 177
BstZI CGGCCG 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 4 cut(s) 72, 204, 462, 526
BsuTUI ATCGAT 1 cut(s) 129
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 4 cut(s) 70, 172, 271, 431
BtsIMutI CAGTG 2 cut(s) 196, 520
Cfr13I GGNCC 5 cut(s) 4, 79, 100, 202, 203
ClaI ATCGAT 1 cut(s) 129
CviJI RGCY 6 cut(s) 72, 204, 441, 462, 526, 543
CviKI_1 RGCY 6 cut(s) 72, 204, 441, 462, 526, 543
DdeI CTNAG 2 cut(s) 42, 464
DraI TTTAAA 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 3 cut(s) 4, 79, 100
Eco52I CGGCCG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 538
EcoO109I RGGNCCY 3 cut(s) 79, 202, 203
EcoT38I GRGCYC 1 cut(s) 206
FaiI YATR 7 cut(s) 98, 342, 344, 352, 360, 558, 588
FaqI GGGAC 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 70, 394, 544
FokI GGATG 4 cut(s) 77, 179, 278, 438
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 70, 394, 544
FspBI CTAG 2 cut(s) 210, 275
GluI GCNGC 3 cut(s) 70, 394, 544
HaeIII GGCC 4 cut(s) 72, 204, 462, 526
HinfI GANTC 1 cut(s) 38
HphI GGTGA 2 cut(s) 317, 527
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 2 cut(s) 22, 298
Hpy8I GTNNAC 1 cut(s) 518
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 3 cut(s) 464, 537, 573
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 114, 196, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 543
HpyF3I CTNAG 2 cut(s) 42, 464
HpySE526I ACGT 1 cut(s) 9
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 8 cut(s) 20, 41, 105, 184, 457, 466, 508, 576
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 1 cut(s) 416
MaeI CTAG 2 cut(s) 210, 275
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 10
MboII GAAGA 7 cut(s) 9, 155, 182, 251, 266, 281, 296
MhlI GDGCHC 2 cut(s) 57, 206
MluCI AATT 3 cut(s) 300, 408, 498
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 7 cut(s) 43, 115, 216, 397, 431, 440, 541
MseI TTAA 2 cut(s) 323, 619
MspA1I CMGCKG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 385
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 543
NlaIV GGNNCC 4 cut(s) 102, 203, 204, 442
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 10
PctI GAATGC 1 cut(s) 385
PfeI GAWTC 1 cut(s) 38
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 71, 395, 545
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspN4I GGNNCC 4 cut(s) 102, 203, 204, 442
PspOMI GGGCCC 1 cut(s) 202
PspPI GGNCC 5 cut(s) 4, 79, 100, 202, 203
PspPPI RGGWCCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 323, 619
SatI GCNGC 3 cut(s) 70, 394, 544
Sau96I GGNCC 5 cut(s) 4, 79, 100, 202, 203
SduI GDGCHC 2 cut(s) 57, 206
SetI ASST 7 cut(s) 12, 54, 84, 177, 365, 408, 517
SfaNI GCATC 1 cut(s) 416
SinI GGWCC 3 cut(s) 4, 79, 100
SmlI CTYRAG 2 cut(s) 176, 485
SmoI CTYRAG 2 cut(s) 176, 485
Sse9I AATT 3 cut(s) 300, 408, 498
SsiI CCGC 4 cut(s) 69, 396, 423, 544
SspI AATATT 1 cut(s) 162
SspMI CTAG 2 cut(s) 210, 275
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 57, 129
TasI AATT 3 cut(s) 300, 408, 498
TauI GCSGC 2 cut(s) 72, 546
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 323, 619
Tru9I TTAA 2 cut(s) 323, 619
TscAI CASTG 2 cut(s) 203, 527
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 393
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 183, 252, 282
TspRI CASTG 2 cut(s) 203, 527
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 3 cut(s) 4, 79, 100
XspI CTAG 2 cut(s) 210, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.