RchiOBHm_Chr2g0131001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000181
Physical Location & Seq
Reverse (-)
47097172 .. 47100066
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50238

Sequence Viewer

Length: 771 bp
ATGTCTCTTGGAAAAGCAGCGAAGATCGACAATGTGGAGCGAATATCGACCAGTCACAAAGATCGTCGTTTTAAATTGGAAAAAGCAGCTAAAGAGCGGGTTCTCTCTAAGAATTTTCCCGATGTGTCTTTGTCGGACGAGGTAAAAAACAGTTTGGTGGAAAAGTTAGGAAACTCTTTTTGGGCATTCGTAGAAGATGATTCGTTGGAAGATGAAGTAGAGGATTTGTTGGTATGTGAAGAAAAGGCTTTGTTGGAACATGAAGAAAAGGCTGTGTTGGACGAGCTAGCCAAGGCAAATTTGGAAGAGGAAGAAAAGGCTTCTGGTACCAATTCAATAGGAGACAAGAAACCTTCTTTCACAGGTATAGACTATGAAAGTGCATATCCAGACAACACTGACTCTAATCGAGAATTTCTTAAAGATCGAGAATTTCTTAAAGATATTGATTGCGCACCTATCGAACTAGGAGATGAAATGGATTGGGGAGTTTGTAGAGTTTGTTTGAAGGAAAATGAGCACCATTTTTCACATTGCCCGTACCTTTTCTTTGGTGTCCCGGACGGCGCAACTATTGGACCTGGGTATGCATTAGCCTGCAAGGAATGTTATGAGGTGGATGGCCACCCTGACAGACCCTGGGAAGCGATCGCTGTTAGAAGGGTGTGCGACTTTTGCATATGGCGTGCACATTGGACTGAAGACTGCCCATATCAGGTACCAGAGGGCGATCGTGCTTTATTGAGTACAAACCAAATAAGCACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

29.04

Weight (kDa)

4.63

Isoelectric Point (pI)

28.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 454
Acc65I GGTACC 2 cut(s) 326, 718
AccB1I GGYRCC 2 cut(s) 326, 718
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 4 cut(s) 112, 298, 413, 431
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 4 cut(s) 328, 542, 720, 748
AfiI CCNNNNNNNGG 1 cut(s) 715
AgsI TTSAA 2 cut(s) 336, 508
AjnI CCWGG 2 cut(s) 580, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 2 cut(s) 89, 286
AluI AGCT 2 cut(s) 89, 286
Alw21I GWGCWC 2 cut(s) 522, 691
Alw26I GTCTC 2 cut(s) 9, 336
Alw44I GTGCAC 1 cut(s) 687
AlwNI CAGNNNCTG 1 cut(s) 639
AoxI GGCC 1 cut(s) 622
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 2 cut(s) 17, 86
ApoI RAATTY 4 cut(s) 112, 298, 413, 431
AsiSI GCGATCGC 1 cut(s) 651
Asp718I GGTACC 2 cut(s) 326, 718
AspLEI GCGC 2 cut(s) 455, 569
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 1 cut(s) 560
AsuNHI GCTAGC 1 cut(s) 286
AvaII GGWCC 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 691
BalI TGGCCA 1 cut(s) 624
BanI GGYRCC 2 cut(s) 326, 718
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 2 cut(s) 522, 691
BbvI GCAGC 2 cut(s) 29, 98
BccI CCATC 1 cut(s) 614
BceAI ACGGC 1 cut(s) 580
BciT130I CCWGG 2 cut(s) 582, 640
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 2 cut(s) 9, 336
BfaI CTAG 3 cut(s) 287, 467, 769
BisI GCNGC 2 cut(s) 18, 87
BlsI GCNGC 2 cut(s) 19, 88
Bme1390I CCNGG 3 cut(s) 560, 582, 640
Bme18I GGWCC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 2 cut(s) 328, 720
BmrFI CCNGG 3 cut(s) 560, 582, 640
BmtI GCTAGC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 560
BsaJI CCNNGG 4 cut(s) 291, 581, 638, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 715
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 2 cut(s) 582, 640
BseDI CCNNGG 4 cut(s) 291, 581, 638, 639
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 1 cut(s) 715
BseMI GCAATG 1 cut(s) 532
BseNI ACTGG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 2 cut(s) 29, 98
Bsh1285I CGRYCG 2 cut(s) 651, 733
BshFI GGCC 1 cut(s) 624
BshNI GGYRCC 2 cut(s) 326, 718
BsiEI CGRYCG 2 cut(s) 651, 733
BsiHKAI GWGCWC 2 cut(s) 522, 691
BsiSI CCGG 1 cut(s) 560
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 715
BsmAI GTCTC 2 cut(s) 9, 336
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 624
Bsp1286I GDGCHC 2 cut(s) 522, 691
Bsp143I GATC 5 cut(s) 24, 61, 424, 648, 730
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 624
BspLI GGNNCC 2 cut(s) 328, 720
BspOI GCTAGC 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 326, 718
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 532
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 4 cut(s) 291, 581, 638, 639
BssMI GATC 5 cut(s) 24, 61, 424, 648, 730
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 582, 640
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 288, 598, 687
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 625
BstHHI GCGC 2 cut(s) 455, 569
BstKTI GATC 5 cut(s) 27, 64, 427, 651, 733
BstMAI GTCTC 2 cut(s) 9, 336
BstMBI GATC 5 cut(s) 24, 61, 424, 648, 730
BstMCI CGRYCG 2 cut(s) 651, 733
BstMWI GCNNNNNNNGC 1 cut(s) 675
BstNI CCWGG 2 cut(s) 582, 640
BstSCI CCNGG 3 cut(s) 558, 580, 638
BstSLI GKGCMC 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 29, 98
BstV2I GAAGAC 1 cut(s) 708
BsuRI GGCC 1 cut(s) 624
BtsCI GGATG 1 cut(s) 625
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 3 cut(s) 288, 598, 687
CaiI CAGNNNCTG 1 cut(s) 639
CfoI GCGC 2 cut(s) 455, 569
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 4 cut(s) 327, 541, 719, 747
CviAII CATG 1 cut(s) 260
CviJI RGCY 8 cut(s) 89, 248, 272, 286, 290, 320, 596, 624
CviKI_1 RGCY 8 cut(s) 89, 248, 272, 286, 290, 320, 596, 624
CviQI GTAC 4 cut(s) 327, 541, 719, 747
DdeI CTNAG 1 cut(s) 108
DpnI GATC 5 cut(s) 26, 63, 426, 650, 732
DpnII GATC 5 cut(s) 24, 61, 424, 648, 730
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 720
EcoRII CCWGG 2 cut(s) 580, 638
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 1 cut(s) 263
FaqI GGGAC 1 cut(s) 542
FatI CATG 1 cut(s) 259
FauI CCCGC 1 cut(s) 90
FauNDI CATATG 1 cut(s) 680
Fnu4HI GCNGC 2 cut(s) 18, 87
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 18, 87
FspBI CTAG 3 cut(s) 287, 467, 769
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 2 cut(s) 454, 568
GluI GCNGC 2 cut(s) 18, 87
HaeIII GGCC 1 cut(s) 624
HapII CCGG 1 cut(s) 560
HhaI GCGC 2 cut(s) 455, 569
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 2 cut(s) 453, 567
HinP1I GCGC 2 cut(s) 453, 567
HinfI GANTC 2 cut(s) 200, 401
HpaII CCGG 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 689
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 4 cut(s) 119, 389, 410, 428
Hpy8I GTNNAC 1 cut(s) 689
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 3 cut(s) 363, 502, 654
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 5 cut(s) 383, 590, 600, 678, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 675
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 2 cut(s) 453, 567
KpnI GGTACC 2 cut(s) 330, 722
Kzo9I GATC 5 cut(s) 24, 61, 424, 648, 730
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 2 cut(s) 29, 98
MaeI CTAG 3 cut(s) 287, 467, 769
MaeIII GTNAC 1 cut(s) 53
MalI GATC 5 cut(s) 26, 63, 426, 650, 732
MbiI CCGCTC 1 cut(s) 97
MboI GATC 5 cut(s) 24, 61, 424, 648, 730
MboII GAAGA 8 cut(s) 34, 206, 221, 251, 275, 317, 323, 713
MhlI GDGCHC 2 cut(s) 522, 691
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 6 cut(s) 74, 112, 298, 331, 413, 431
MluNI TGGCCA 1 cut(s) 624
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 4 cut(s) 114, 186, 234, 258
MnlI CCTC 5 cut(s) 133, 214, 301, 607, 718
Mox20I TGGCCA 1 cut(s) 624
Mph1103I ATGCAT 1 cut(s) 592
MscI TGGCCA 1 cut(s) 624
MseI TTAA 3 cut(s) 72, 420, 438
Msp20I TGGCCA 1 cut(s) 624
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 3 cut(s) 560, 582, 640
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 2 cut(s) 582, 640
MwoI GCNNNNNNNGC 1 cut(s) 675
NciI CCSGG 1 cut(s) 560
NdeI CATATG 1 cut(s) 680
NdeII GATC 5 cut(s) 24, 61, 424, 648, 730
NheI GCTAGC 1 cut(s) 286
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 328, 720
NmuCI GTSAC 1 cut(s) 53
NsbI TGCGCA 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 592
PasI CCCWGGG 1 cut(s) 639
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 558
PkrI GCNGC 2 cut(s) 19, 88
Ple19I CGATCG 2 cut(s) 651, 733
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
Psp6I CCWGG 2 cut(s) 580, 638
PspGI CCWGG 2 cut(s) 580, 638
PspN4I GGNNCC 2 cut(s) 328, 720
PspPI GGNCC 1 cut(s) 578
PstNI CAGNNNCTG 1 cut(s) 639
PvuI CGATCG 2 cut(s) 651, 733
RgaI GCGATCGC 1 cut(s) 651
RsaI GTAC 4 cut(s) 328, 542, 720, 748
RsaNI GTAC 4 cut(s) 327, 541, 719, 747
SaqAI TTAA 3 cut(s) 72, 420, 438
SatI GCNGC 2 cut(s) 18, 87
Sau3AI GATC 5 cut(s) 24, 61, 424, 648, 730
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 3 cut(s) 560, 582, 640
SduI GDGCHC 2 cut(s) 522, 691
SfaAI GCGATCGC 1 cut(s) 651
SgfI GCGATCGC 1 cut(s) 651
SinI GGWCC 1 cut(s) 578
Sse9I AATT 6 cut(s) 74, 112, 298, 331, 413, 431
SsiI CCGC 1 cut(s) 97
SspMI CTAG 3 cut(s) 287, 467, 769
StyD4I CCNGG 3 cut(s) 558, 580, 638
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 5 cut(s) 27, 47, 409, 427, 462
TasI AATT 6 cut(s) 74, 112, 298, 331, 413, 431
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 3 cut(s) 72, 420, 438
Tru9I TTAA 3 cut(s) 72, 420, 438
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 17, 86
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 4 cut(s) 228, 276, 390, 489
TspRI CASTG 1 cut(s) 403
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 1 cut(s) 578
XapI RAATTY 4 cut(s) 112, 298, 413, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 3 cut(s) 287, 467, 769
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.