Rroxscaffold_1G00042380

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000181
Physical Location & Seq
Forward (+)
60451729 .. 60454427
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042380.1

Sequence Viewer

Length: 438 bp
ATGGCAGACACTGATGGTTCTCCTGGACCAAACAGCACTCGCAGTATGTCACGCATCATTCAGAAGTGGTATACAGTCGGCCCCCCAGAGGATAGATGTTTGATTTGTTGCTTGGATGAACACACTTCATTTCTATGCCCGTACAATGTTGAAGTCCCAAAGAATGCAATTGTAGGCAGCGGCTGTGACGTAATTTGTAAGGTTTGTGATCGTTTGTTCTTTGGGCGCTGTTGTAACCAAGATACAGGACGTGCTAAGCTCAAGTTTTGTGATATCTGTTTCAAGTATGGCGAACACTGGATGCTGCAGTGCCCACGCAAGCCTGAATGTGATCTCAGTAAAATCGGGGATTCTTCTGATCACTTAATTGCATGTGCAGCTACAGGTCGTCCTCCAATTGTAAATGTGAGGAAGAAAAAGAAGATAAATGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.15

Weight (kDa)

8.53

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 71
AciI CCGC 1 cut(s) 180
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 152, 283
AjiI CACGTC 1 cut(s) 251
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 259, 380
AluI AGCT 2 cut(s) 259, 380
AlwNI CAGNNNCTG 2 cut(s) 11, 183
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 177, 304, 377
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 26, 80
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 314
BbvI GCAGC 3 cut(s) 189, 291, 389
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 358
BfmI CTRYAG 2 cut(s) 305, 381
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 4 cut(s) 178, 181, 305, 378
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 4 cut(s) 179, 182, 306, 379
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 26, 80
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 63, 291
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 121, 306
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 3 cut(s) 189, 291, 389
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 1 cut(s) 81
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 3 cut(s) 208, 331, 358
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 309
BsrI ACTGG 1 cut(s) 302
BssMI GATC 3 cut(s) 208, 331, 358
BssNAI GTATAC 1 cut(s) 72
Bst1107I GTATAC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 255, 335
BstF5I GGATG 2 cut(s) 121, 306
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 3 cut(s) 211, 334, 361
BstMBI GATC 3 cut(s) 208, 331, 358
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 305, 381
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 189, 291, 389
BstZ17I GTATAC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 81
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 2 cut(s) 121, 306
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 3 cut(s) 9, 295, 314
Cac8I GCNNGC 1 cut(s) 320
CaiI CAGNNNCTG 2 cut(s) 11, 183
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 26, 80
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 372
CviJI RGCY 5 cut(s) 81, 183, 259, 322, 380
CviKI_1 RGCY 5 cut(s) 81, 183, 259, 322, 380
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 255, 335
DpnI GATC 3 cut(s) 210, 333, 360
DpnII GATC 3 cut(s) 208, 331, 358
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 22
EcoRV GATATC 1 cut(s) 274
FaeI CATG 1 cut(s) 375
FaiI YATR 5 cut(s) 47, 72, 136, 288, 373
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 371
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 4 cut(s) 178, 181, 305, 378
FokI GGATG 2 cut(s) 128, 313
Fsp4HI GCNGC 4 cut(s) 178, 181, 305, 378
GlaI GCGC 1 cut(s) 227
GluI GCNGC 4 cut(s) 178, 181, 305, 378
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 81
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 375
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 63, 358
Hpy8I GTNNAC 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 2 cut(s) 189, 250
HpyCH4V TGCA 4 cut(s) 167, 307, 371, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 2 cut(s) 255, 335
HpySE526I ACGT 2 cut(s) 189, 250
Hsp92II CATG 1 cut(s) 375
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 3 cut(s) 208, 331, 358
LpnPI CCDG 7 cut(s) 9, 36, 99, 231, 283, 336, 369
Lsp1109I GCAGC 3 cut(s) 189, 291, 389
LweI GCATC 2 cut(s) 63, 291
MaeII ACGT 2 cut(s) 189, 250
MaeIII GTNAC 3 cut(s) 48, 185, 233
MalI GATC 3 cut(s) 210, 333, 360
MboI GATC 3 cut(s) 208, 331, 358
MboII GAAGA 3 cut(s) 345, 424, 433
MfeI CAATTG 2 cut(s) 168, 396
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 4 cut(s) 168, 192, 366, 396
MnlI CCTC 3 cut(s) 82, 402, 402
MseI TTAA 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 2 cut(s) 168, 396
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 3 cut(s) 208, 331, 358
NlaIII CATG 1 cut(s) 375
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 48, 185
NspI RCATGY 1 cut(s) 375
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 4 cut(s) 179, 182, 306, 379
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 2 cut(s) 26, 80
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 2 cut(s) 11, 183
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 4 cut(s) 178, 181, 305, 378
Sau3AI GATC 3 cut(s) 208, 331, 358
Sau96I GGNCC 2 cut(s) 26, 80
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 314
SetI ASST 6 cut(s) 192, 204, 253, 261, 382, 388
SfaNI GCATC 2 cut(s) 63, 291
SfcI CTRYAG 2 cut(s) 305, 381
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 4 cut(s) 168, 192, 366, 396
SsiI CCGC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 2 cut(s) 192, 253
TasI AATT 4 cut(s) 168, 192, 366, 396
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 3 cut(s) 16, 302, 314
TseFI GTSAC 2 cut(s) 48, 185
TseI GCWGC 3 cut(s) 177, 304, 377
Tsp45I GTSAC 2 cut(s) 48, 185
TspDTI ATGAA 2 cut(s) 117, 132
TspRI CASTG 3 cut(s) 16, 302, 314
VpaK11BI GGWCC 1 cut(s) 26
XceI RCATGY 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.