RLG00000025188

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000181
Physical Location & Seq
Forward (+)
42892108 .. 42893689
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025188

Sequence Viewer

Length: 354 bp
ATGAAGCTGGCGAGGTTATCGGAATCAAAGGATGAAGAACCAAAGGCTCGATGGCCTTATCTGGATCCATGGCCTTATATCCGCAATTTACCTGATGGAAGAACCCACCTACTGAGCATCCTTGCGCTGCTTATACCCCCTGATGATCCTGGTACTTTCTCTGAAAAATCAAAGCTCCGTCTCCCTATTTGGCCCTTCCCTCGTGTCACTCGCGAAATTCCTGGGCACTGCTGTAACCAAGATGCTGGACGTGCTGAGCTCAGGTTATGTGATAATTGTATGAGGATTGGTGAACACCGGACATCTCAGTGCCCGGAGAAGAATAGGCACTTAAGCTACTGGCAGTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.7

Weight (kDa)

8.68

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 1 cut(s) 82
AclWI GGATC 3 cut(s) 59, 72, 140
AcsI RAATTY 1 cut(s) 216
AfaI GTAC 1 cut(s) 154
AflII CTTAAG 1 cut(s) 331
AjiI CACGTC 1 cut(s) 251
AjnI CCWGG 2 cut(s) 148, 220
AluBI AGCT 4 cut(s) 7, 175, 259, 336
AluI AGCT 4 cut(s) 7, 175, 259, 336
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 3 cut(s) 59, 72, 140
AoxI GGCC 3 cut(s) 53, 71, 191
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 216
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 302
BaeGI GKGCMC 2 cut(s) 228, 314
BamHI GGATCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 261
BauI CACGAG 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 45, 89
BciT130I CCWGG 2 cut(s) 150, 222
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 185
BfrI CTTAAG 1 cut(s) 331
BisI GCNGC 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 3 cut(s) 150, 222, 314
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 3 cut(s) 150, 222, 314
BmsI GCATC 2 cut(s) 126, 232
Bpu10I CCTNAGC 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 68, 221
BsaWI WCCGGW 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 344
BseBI CCWGG 2 cut(s) 150, 222
BseDI CCNNGG 2 cut(s) 68, 221
BseGI GGATG 2 cut(s) 37, 117
BseMII CTCAG 4 cut(s) 104, 246, 274, 320
BseNI ACTGG 1 cut(s) 344
BseSI GKGCMC 2 cut(s) 228, 314
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 3 cut(s) 55, 73, 193
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 2 cut(s) 298, 314
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsnI GGCC 3 cut(s) 55, 73, 193
Bsp1286I GDGCHC 3 cut(s) 228, 261, 314
Bsp143I GATC 2 cut(s) 64, 145
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 68
Bsp68I TCGCGA 1 cut(s) 213
BspACI CCGC 1 cut(s) 82
BspANI GGCC 3 cut(s) 55, 73, 193
BspCNI CTCAG 4 cut(s) 105, 247, 273, 319
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 3 cut(s) 59, 72, 140
BspTI CTTAAG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 68, 221
BssMI GATC 2 cut(s) 64, 145
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 150, 222
BstAFI CTTAAG 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 4 cut(s) 113, 255, 260, 306
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 37, 117
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 2 cut(s) 67, 148
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 64, 145
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 150, 222
BstSCI CCNGG 3 cut(s) 148, 220, 312
BstSLI GKGCMC 2 cut(s) 228, 314
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 64
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 3 cut(s) 55, 73, 193
BtgI CCRYGG 1 cut(s) 68
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 2 cut(s) 37, 117
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 226, 314
BtuMI TCGCGA 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 69
CviJI RGCY 8 cut(s) 7, 47, 55, 73, 175, 193, 259, 336
CviKI_1 RGCY 8 cut(s) 7, 47, 55, 73, 175, 193, 259, 336
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 113, 255, 260, 306
DpnI GATC 2 cut(s) 66, 147
DpnII GATC 2 cut(s) 64, 145
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 148, 220
EcoT14I CCWWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 1 cut(s) 72
FaiI YATR 5 cut(s) 70, 78, 134, 268, 281
FatI CATG 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 2 cut(s) 44, 104
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 128
GlaI GCGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 3 cut(s) 55, 73, 193
HapII CCGG 2 cut(s) 298, 314
HhaI GCGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 23
HpaII CCGG 2 cut(s) 298, 314
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 22, 163
Hpy188III TCNNGA 2 cut(s) 62, 212
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 4 cut(s) 113, 255, 260, 306
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 64, 145
LmnI GCTCC 1 cut(s) 180
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 2 cut(s) 126, 232
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 205, 233
MalI GATC 2 cut(s) 66, 147
MboI GATC 2 cut(s) 64, 145
MboII GAAGA 3 cut(s) 47, 111, 331
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 3 cut(s) 228, 261, 314
MluCI AATT 3 cut(s) 85, 216, 274
MnlI CCTC 3 cut(s) 6, 210, 276
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 307
MspCI CTTAAG 1 cut(s) 331
MspI CCGG 2 cut(s) 298, 314
MspR9I CCNGG 3 cut(s) 150, 222, 314
MvaI CCWGG 2 cut(s) 150, 222
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 314
NcoI CCATGG 1 cut(s) 68
NdeII GATC 2 cut(s) 64, 145
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 205
NruI TCGCGA 1 cut(s) 213
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 148, 220
PspGI CCWGG 2 cut(s) 148, 220
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 64
RruI TCGCGA 1 cut(s) 213
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 307
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 2 cut(s) 64, 145
Sau96I GGNCC 1 cut(s) 192
ScrFI CCNGG 3 cut(s) 150, 222, 314
SduI GDGCHC 3 cut(s) 228, 261, 314
SetI ASST 9 cut(s) 9, 17, 94, 111, 177, 253, 261, 266, 338
SfaNI GCATC 2 cut(s) 126, 232
SmiMI CAYNNNNRTG 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 3 cut(s) 85, 216, 274
SsiI CCGC 1 cut(s) 82
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 3 cut(s) 148, 220, 312
StyI CCWWGG 1 cut(s) 68
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 49
TasI AATT 3 cut(s) 85, 216, 274
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 233, 314
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 17, 48
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 2 cut(s) 233, 314
Vha464I CTTAAG 1 cut(s) 331
XapI RAATTY 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.