RLG00000033860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000181
Physical Location & Seq
Forward (+)
33313520 .. 33315530
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033860

Sequence Viewer

Length: 576 bp
ATGCCTCTGGAGCCGCCCAACCTCAACCTCACAGATCAGGACGGCAAGATCCGCACTCATGGTACCGGTTCAAAAGACTCGAAGCTTGCTGGAAAGTCTTTGACTCAACAACTTAACTACTTGTCGCTGGCTCTGCTGCTCCCTCTCCCTCATGAACAAGAAGAAGAATCAGCAAAGGAAGAAGAAGAAGAAGAAGAAGAGGATGAAGAGGATGAAGAAGAGGGTAAAGAAGGAGAACAAGAGGATGAAGACGAGGAAGAAGAATTTGACGTTTGTGATGTTTGCTTGAAGGACAAGGAACACTGGACATTTGATTGCCCGTACCTGGATCGCATCCTGATCCCGGAGACGACAACTGTTGGCAGTGGCTATGCAATAGTTTGTAGAGGATGTCATGTATTGGGTGGCCATTCTGATAGGGACTGGGTAGGACGTGCCATTATGAAGTCTTGTAGTATTTGTGAGGAACCAGCTTCTCACTGGACTTACGAATGCCCGGAAAACCCTGACCCCAGAAGGTATGACAATTCGAATAACCGCAAGGTGTTGATGCAAGAGGTCTATAGTGTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.79

Weight (kDa)

4.3

Isoelectric Point (pI)

65.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 63 - 110 7.4e-06 Eukaryotic translation initiation factor 3 subunit G
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 3 cut(s) 14, 52, 538
AclWI GGATC 3 cut(s) 43, 334, 336
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 2 cut(s) 64, 323
AfiI CCNNNNNNNGG 2 cut(s) 325, 343
AgeI ACCGGT 1 cut(s) 65
AgsI TTSAA 2 cut(s) 72, 289
AjiI CACGTC 1 cut(s) 434
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 2 cut(s) 85, 473
AluI AGCT 2 cut(s) 85, 473
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 3 cut(s) 43, 334, 336
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 65
Asp718I GGTACC 1 cut(s) 62
AsuC2I CCSGG 2 cut(s) 344, 497
AsuII TTCGAA 1 cut(s) 530
BalI TGGCCA 1 cut(s) 408
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 123
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 2 cut(s) 344, 497
BcoDI GTCTC 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 562
BisI GCNGC 2 cut(s) 14, 137
BlsI GCNGC 2 cut(s) 15, 138
Bme1390I CCNGG 3 cut(s) 326, 344, 497
BmgBI CACGTC 1 cut(s) 434
BmiI GGNNCC 3 cut(s) 12, 64, 468
BmrFI CCNGG 3 cut(s) 326, 344, 497
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 2 cut(s) 342, 540
BmuI ACTGGG 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 530
BpuMI CCSGG 2 cut(s) 344, 497
BsaWI WCCGGW 1 cut(s) 65
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 343
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 3 cut(s) 308, 428, 485
BseBI CCWGG 1 cut(s) 326
BseGI GGATG 5 cut(s) 208, 217, 250, 333, 395
BseLI CCNNNNNNNGG 2 cut(s) 325, 343
BseNI ACTGG 3 cut(s) 308, 428, 485
BseXI GCAGC 1 cut(s) 123
BshFI GGCC 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 65
BsiSI CCGG 3 cut(s) 66, 344, 497
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 325, 343
BsmAI GTCTC 1 cut(s) 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 1 cut(s) 408
Bsp119I TTCGAA 1 cut(s) 530
Bsp143I GATC 4 cut(s) 34, 48, 328, 339
BspACI CCGC 3 cut(s) 14, 52, 538
BspANI GGCC 1 cut(s) 408
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 12, 64, 468
BspPI GGATC 3 cut(s) 43, 334, 336
BspT104I TTCGAA 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 3 cut(s) 308, 428, 485
BssAI RCCGGY 1 cut(s) 65
BssMI GATC 4 cut(s) 34, 48, 328, 339
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 3 cut(s) 192, 201, 213
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 87, 129
BstF5I GGATG 5 cut(s) 208, 217, 250, 333, 395
BstKTI GATC 4 cut(s) 37, 51, 331, 342
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 4 cut(s) 34, 48, 328, 339
BstMWI GCNNNNNNNGC 3 cut(s) 10, 51, 133
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 3 cut(s) 324, 342, 495
BstSFI CTRYAG 1 cut(s) 562
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 1 cut(s) 408
BtrI CACGTC 1 cut(s) 434
BtsCI GGATG 5 cut(s) 208, 217, 250, 333, 395
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 301, 370, 478
Cac8I GCNNGC 2 cut(s) 87, 129
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 65
Csp6I GTAC 2 cut(s) 63, 322
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 4 cut(s) 59, 152, 395, 573
CviJI RGCY 6 cut(s) 13, 85, 131, 369, 408, 473
CviKI_1 RGCY 6 cut(s) 13, 85, 131, 369, 408, 473
CviQI GTAC 2 cut(s) 63, 322
DpnI GATC 4 cut(s) 36, 50, 330, 341
DpnII GATC 4 cut(s) 34, 48, 328, 339
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 3 cut(s) 192, 201, 213
EarI CTCTTC 3 cut(s) 192, 201, 213
EcoRII CCWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 4 cut(s) 62, 155, 398, 576
FaiI YATR 8 cut(s) 60, 153, 372, 396, 443, 522, 564, 574
FaqI GGGAC 1 cut(s) 434
FatI CATG 4 cut(s) 58, 151, 394, 572
Fnu4HI GCNGC 2 cut(s) 14, 137
FokI GGATG 5 cut(s) 215, 224, 257, 320, 402
Fsp4HI GCNGC 2 cut(s) 14, 137
GluI GCNGC 2 cut(s) 14, 137
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 408
HapII CCGG 3 cut(s) 66, 344, 497
Hin1II CATG 4 cut(s) 62, 155, 398, 576
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 3 cut(s) 77, 103, 167
HpaII CCGG 3 cut(s) 66, 344, 497
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 8, 38, 152, 337
HpyAV CCTTC 3 cut(s) 224, 283, 510
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 270, 433
HpyCH4V TGCA 2 cut(s) 374, 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 51, 133
HpySE526I ACGT 2 cut(s) 270, 433
Hsp92II CATG 4 cut(s) 62, 155, 398, 576
KpnI GGTACC 1 cut(s) 66
Kzo9I GATC 4 cut(s) 34, 48, 328, 339
LmnI GCTCC 2 cut(s) 10, 144
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 2 cut(s) 342, 540
MaeII ACGT 2 cut(s) 270, 433
MalI GATC 4 cut(s) 36, 50, 330, 341
MboI GATC 4 cut(s) 34, 48, 328, 339
MflI RGATCY 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 2 cut(s) 263, 526
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 2 cut(s) 71, 97
Mox20I TGGCCA 1 cut(s) 408
MscI TGGCCA 1 cut(s) 408
MseI TTAA 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 408
MspI CCGG 3 cut(s) 66, 344, 497
MspR9I CCNGG 3 cut(s) 326, 344, 497
Mva1269I GAATGC 1 cut(s) 497
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 10, 51, 133
NciI CCSGG 2 cut(s) 344, 497
NdeII GATC 4 cut(s) 34, 48, 328, 339
NlaIII CATG 4 cut(s) 62, 155, 398, 576
NlaIV GGNNCC 3 cut(s) 12, 64, 468
NspV TTCGAA 1 cut(s) 530
PagI TCATGA 1 cut(s) 151
PctI GAATGC 1 cut(s) 497
PfeI GAWTC 1 cut(s) 167
PfoI TCCNGGA 1 cut(s) 342
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 2 cut(s) 15, 138
PleI GAGTC 2 cut(s) 71, 97
PpsI GAGTC 2 cut(s) 71, 97
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 12, 64, 468
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 2 cut(s) 64, 323
RsaNI GTAC 2 cut(s) 63, 322
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 14, 137
Sau3AI GATC 4 cut(s) 34, 48, 328, 339
SchI GAGTC 2 cut(s) 71, 97
ScrFI CCNGG 3 cut(s) 326, 344, 497
SfaNI GCATC 2 cut(s) 342, 540
SfcI CTRYAG 1 cut(s) 562
SfuI TTCGAA 1 cut(s) 530
Sse9I AATT 2 cut(s) 263, 526
SsiI CCGC 3 cut(s) 14, 52, 538
StyD4I CCNGG 3 cut(s) 324, 342, 495
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 2 cut(s) 273, 436
TaqI TCGA 2 cut(s) 80, 530
TasI AATT 2 cut(s) 263, 526
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 3 cut(s) 308, 370, 485
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 168, 219, 228, 261, 458
TspRI CASTG 3 cut(s) 308, 370, 485
XapI RAATTY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.