FvH4_6g38111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Reverse (-)
30153485 .. 30155016
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38111.t1

Sequence Viewer

Length: 603 bp
ATGTCTCTTGTCGAATCACAATTATCCAACTTGGTCTCCCCGGGCAAGGACCTCAAGATCCAGACCCTTGGAAAAAACAAGGCTGTTGAAATCTCATCGTCTCAACTTGAATTAGAGGAGGAAGAGAAAGAAGAAGTTAAAGAAGGAGAAAAAGAAGCAGAAGAAGAAGTTGTGGAAGAGGAAGAGGAAGAAAATGAACCTGAACATGAAGAAGGAGAAGACGAAGCAGAAGAAGATGAAGAAGAATTTATGGAAATGTGTGATGTTTGTTTGAAGGACAAGGATCACTGGACGGATGAATGCCCGTACTTGGTTTATATCCCAAACCCAATGGAAGTAACTCTTGGCAAGGGCTATGATATAGTTTGTCTACGCTGTAATGTGTTTGGTGGCCACTCTGATGTTGCTGGTATGGACTGTAAGGTGTGTGGTGGCAACCCTAATGGGAGGTGGATAGGACGTGCTAAAATCAAGTACTGTGTTATTTGTAAGCACTATGACCATCGTTACCTATTAGAAACGCAAAAGAGTGTGTCAGACTGTGTTGATGAGTATGACTCTTGGTTGGCTACAAAAAAATCCCAAACAGACAAGGGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.87

Weight (kDa)

4.37

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 370
AclWI GGATC 2 cut(s) 52, 291
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 308, 476
AfiI CCNNNNNNNGG 2 cut(s) 46, 310
AgsI TTSAA 3 cut(s) 89, 110, 274
AjiI CACGTC 1 cut(s) 461
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
Alw26I GTCTC 3 cut(s) 9, 40, 105
AlwI GGATC 2 cut(s) 52, 291
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 1 cut(s) 391
ApoI RAATTY 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 2 cut(s) 41, 42
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 225
BccI CCATC 1 cut(s) 510
BcnI CCSGG 2 cut(s) 41, 42
BcoDI GTCTC 3 cut(s) 9, 40, 105
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 2 cut(s) 41, 42
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 41, 42
BpiI GAAGAC 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 41, 42
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 39, 40, 67
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 310
Bse1I ACTGG 1 cut(s) 293
BseDI CCNNGG 3 cut(s) 39, 40, 67
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 46, 310
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 46, 310
BsmAI GTCTC 3 cut(s) 9, 40, 105
BsmBI CGTCTC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 40
Bsp143I GATC 2 cut(s) 57, 283
BspANI GGCC 1 cut(s) 393
BspPI GGATC 2 cut(s) 52, 291
BspTNI GGTCTC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 39, 40, 67
BssMI GATC 2 cut(s) 57, 283
BssT1I CCWWGG 1 cut(s) 67
Bst4CI ACNGT 3 cut(s) 419, 479, 542
Bst6I CTCTTC 3 cut(s) 117, 171, 177
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 60, 286
BstMAI GTCTC 3 cut(s) 9, 40, 105
BstMBI GATC 2 cut(s) 57, 283
BstSCI CCNGG 2 cut(s) 39, 40
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 57
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 1 cut(s) 393
BtrI CACGTC 1 cut(s) 461
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 49
Cfr9I CCCGGG 1 cut(s) 40
Csp6I GTAC 2 cut(s) 307, 475
CviAII CATG 1 cut(s) 206
CviJI RGCY 4 cut(s) 83, 354, 393, 569
CviKI_1 RGCY 4 cut(s) 83, 354, 393, 569
CviQI GTAC 2 cut(s) 307, 475
DpnI GATC 2 cut(s) 59, 285
DpnII GATC 2 cut(s) 57, 283
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 3 cut(s) 117, 171, 177
EarI CTCTTC 3 cut(s) 117, 171, 177
Eco130I CCWWGG 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 1 cut(s) 209
FaiI YATR 8 cut(s) 207, 251, 318, 357, 362, 413, 498, 555
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 1 cut(s) 205
FblI GTMKAC 1 cut(s) 370
FokI GGATG 1 cut(s) 308
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 209
HinfI GANTC 2 cut(s) 14, 557
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 2 cut(s) 400, 538
Hpy188III TCNNGA 2 cut(s) 55, 61
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 137, 206, 268
HpyCH4III ACNGT 3 cut(s) 419, 479, 542
HpyCH4IV ACGT 1 cut(s) 460
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 2 cut(s) 57, 283
LpnPI CCDG 5 cut(s) 54, 74, 213, 274, 393
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 337, 506
MalI GATC 2 cut(s) 59, 285
MboI GATC 2 cut(s) 57, 283
MflI RGATCY 1 cut(s) 57
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 3 cut(s) 20, 110, 245
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 6 cut(s) 62, 109, 112, 172, 178, 441
Mox20I TGGCCA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 393
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 393
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 41, 42
Mva1269I GAATGC 1 cut(s) 305
NciI CCSGG 2 cut(s) 41, 42
NdeII GATC 2 cut(s) 57, 283
NlaIII CATG 1 cut(s) 209
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 14
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 2 cut(s) 308, 476
RsaNI GTAC 2 cut(s) 307, 475
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 2 cut(s) 57, 283
Sau96I GGNCC 1 cut(s) 49
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 2 cut(s) 41, 42
SetI ASST 6 cut(s) 54, 202, 426, 452, 463, 513
SinI GGWCC 1 cut(s) 49
SmaI CCCGGG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 3 cut(s) 20, 110, 245
StyD4I CCNGG 2 cut(s) 39, 40
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 419, 479, 542
TaiI ACGT 1 cut(s) 463
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 20, 110, 245
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 293
TspDTI ATGAA 4 cut(s) 210, 222, 252, 312
TspGWI ACGGA 1 cut(s) 308
TspMI CCCGGG 1 cut(s) 40
TspRI CASTG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 245
XmaI CCCGGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 370
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.