Rh2AG570900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000181
Physical Location & Seq
Reverse (-)
80094256 .. 80096398
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG570900.1

Sequence Viewer

Length: 267 bp
ATGAGATCCGCATACACAGGTATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGGCAGGACCTGGCTGTCGTCCCCAAGCCTGATGCCACCAAGGCGGAAGAACCAAAGGCTCGATGGCCTTATATAGATCCATGGCCTTATATAAGCAATTTACCTCATGGTAGGACGATCATAATCTCAAGGAAGAACCCACCTACTGAGCGTCCTTGCGCCGCTTATACCGAGATGGCCACCCCCCGACCCCTGACCCTGGTAAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.07

Weight (kDa)

9.39

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AciI CCGC 3 cut(s) 9, 98, 216
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 58, 253
AjnI CCWGG 2 cut(s) 63, 252
AlwI GGATC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 64
AoxI GGCC 3 cut(s) 119, 137, 231
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 61
AvaII GGWCC 1 cut(s) 61
BalI TGGCCA 1 cut(s) 233
BccI CCATC 2 cut(s) 111, 223
BciT130I CCWGG 2 cut(s) 65, 254
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 65, 254
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 65, 254
BmsI GCATC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 93, 134, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 253
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 2 cut(s) 65, 254
BseDI CCNNGG 3 cut(s) 93, 134, 252
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 58, 253
BseMII CTCAG 1 cut(s) 192
BshFI GGCC 3 cut(s) 121, 139, 233
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 58, 253
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 3 cut(s) 121, 139, 233
Bsp143I GATC 3 cut(s) 5, 130, 171
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 3 cut(s) 9, 98, 216
BspANI GGCC 3 cut(s) 121, 139, 233
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 93, 134, 252
BssMI GATC 3 cut(s) 5, 130, 171
BssT1I CCWWGG 2 cut(s) 93, 134
Bst2UI CCWGG 2 cut(s) 65, 254
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 3 cut(s) 8, 133, 174
BstMBI GATC 3 cut(s) 5, 130, 171
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 2 cut(s) 65, 254
BstSCI CCNGG 2 cut(s) 63, 252
BstX2I RGATCY 2 cut(s) 5, 130
BstYI RGATCY 2 cut(s) 5, 130
BsuRI GGCC 3 cut(s) 121, 139, 233
BtgI CCRYGG 1 cut(s) 134
CaiI CAGNNNCTG 1 cut(s) 64
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 194
CviAII CATG 2 cut(s) 135, 161
CviJI RGCY 6 cut(s) 68, 82, 113, 121, 139, 233
CviKI_1 RGCY 6 cut(s) 68, 82, 113, 121, 139, 233
DdeI CTNAG 1 cut(s) 201
DpnI GATC 3 cut(s) 7, 132, 173
DpnII GATC 3 cut(s) 5, 130, 171
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 231
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 93, 134
Eco47I GGWCC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 63, 252
EcoT14I CCWWGG 2 cut(s) 93, 134
ErhI CCWWGG 2 cut(s) 93, 134
FaeI CATG 2 cut(s) 138, 164
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 134, 160
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
GlaI GCGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 3 cut(s) 121, 139, 233
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 138, 164
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 2 cut(s) 138, 164
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 3 cut(s) 5, 130, 171
LpnPI CCDG 7 cut(s) 3, 44, 50, 77, 96, 239, 260
LweI GCATC 1 cut(s) 76
MalI GATC 3 cut(s) 7, 132, 173
MboI GATC 3 cut(s) 5, 130, 171
MboII GAAGA 2 cut(s) 113, 199
MflI RGATCY 2 cut(s) 5, 130
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 233
MnlI CCTC 3 cut(s) 19, 27, 168
Mox20I TGGCCA 1 cut(s) 233
MscI TGGCCA 1 cut(s) 233
MslI CAYNNNNRTG 2 cut(s) 20, 43
Msp20I TGGCCA 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 65, 254
MvaI CCWGG 2 cut(s) 65, 254
MwoI GCNNNNNNNGC 1 cut(s) 95
NcoI CCATGG 1 cut(s) 134
NdeII GATC 3 cut(s) 5, 130, 171
NlaIII CATG 2 cut(s) 138, 164
PkrI GCNGC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 63, 252
PspGI CCWGG 2 cut(s) 63, 252
PspPI GGNCC 1 cut(s) 61
PspPPI RGGWCCY 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 64
PsuI RGATCY 2 cut(s) 5, 130
RseI CAYNNNNRTG 2 cut(s) 20, 43
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 5, 130, 171
Sau96I GGNCC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 65, 254
SetI ASST 6 cut(s) 22, 30, 38, 66, 160, 199
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 2 cut(s) 20, 43
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 1 cut(s) 151
SsiI CCGC 3 cut(s) 9, 98, 216
StyD4I CCNGG 2 cut(s) 63, 252
StyI CCWWGG 2 cut(s) 93, 134
TaqI TCGA 1 cut(s) 115
TasI AATT 1 cut(s) 151
TauI GCSGC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 61
XcmI CCANNNNNNNNNTGG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.