Rw0G012230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00549
OG0000181
Physical Location & Seq
Reverse (-)
8454 .. 9393
940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G012230.1

Sequence Viewer

Length: 351 bp
ATGAGCAAGAAAGCAGGTATGGAGGTGGCGAGGCCATCGGAATGTTTCCAAAGGCAGGACCTGGCCGTCGTCCCCAAGCCTGATGCCACCAAGGAGGAAGAACCAAAGGCTCGATGGCCTTCTATCAGCAAGTTACTTGATGGTAGGACGATCATAATCTCAAAGATGAACCCACCTACTGAGCGTCCTTGCGCCGCTTATACCAAGACGCCCCCTGATGATCCTGGTACTTTCTCTCAAAAATCAAAGCTCCGTGTCACTGGTCGGCCCATCCCTCGTCCGGCAGTCACTGGCCAAACTCGTTGCCCGTACCTTGATCTTCTCCTAAAGAATGCAACTGTTAGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.81

Weight (kDa)

9.71

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 5
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 2 cut(s) 63, 292
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 2 cut(s) 229, 311
AfiI CCNNNNNNNGG 2 cut(s) 55, 280
AjnI CCWGG 2 cut(s) 60, 223
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
AlwI GGATC 1 cut(s) 215
AlwNI CAGNNNCTG 2 cut(s) 61, 290
AoxI GGCC 5 cut(s) 32, 63, 116, 266, 292
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 58, 267
AvaII GGWCC 1 cut(s) 58
BalI TGGCCA 1 cut(s) 294
BccI CCATC 4 cut(s) 43, 108, 134, 278
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 62, 225
BfuAI ACCTGC 1 cut(s) 5
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 62, 225
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 58, 267
BmrFI CCNGG 2 cut(s) 62, 225
BmsI GCATC 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 280
Bse1I ACTGG 2 cut(s) 265, 295
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 2 cut(s) 62, 225
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 270
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 55, 280
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 265, 295
BshFI GGCC 5 cut(s) 34, 65, 118, 268, 294
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 55, 280
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 5 cut(s) 34, 65, 118, 268, 294
Bsp143I GATC 3 cut(s) 150, 220, 316
BspACI CCGC 1 cut(s) 195
BspANI GGCC 5 cut(s) 34, 65, 118, 268, 294
BspCNI CTCAG 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 5
BspPI GGATC 1 cut(s) 215
BsrI ACTGG 2 cut(s) 265, 295
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 150, 220, 316
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 62, 225
Bst4CI ACNGT 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 180, 348
BstF5I GGATG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 153, 223, 319
BstMBI GATC 3 cut(s) 150, 220, 316
BstNI CCWGG 2 cut(s) 62, 225
BstSCI CCNGG 2 cut(s) 60, 223
BsuRI GGCC 5 cut(s) 34, 65, 118, 268, 294
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 258, 288
BveI ACCTGC 1 cut(s) 5
CaiI CAGNNNCTG 2 cut(s) 61, 290
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 58, 267
CseI GACGC 2 cut(s) 173, 217
Csp6I GTAC 2 cut(s) 228, 310
CviJI RGCY 8 cut(s) 34, 65, 79, 110, 118, 250, 268, 294
CviKI_1 RGCY 8 cut(s) 34, 65, 79, 110, 118, 250, 268, 294
CviQI GTAC 2 cut(s) 228, 310
DdeI CTNAG 2 cut(s) 180, 348
DpnI GATC 3 cut(s) 152, 222, 318
DpnII GATC 3 cut(s) 150, 220, 316
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 2 cut(s) 63, 292
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 60, 223
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaiI YATR 3 cut(s) 20, 155, 201
FaqI GGGAC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 195
GlaI GCGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 5 cut(s) 34, 65, 118, 268, 294
HapII CCGG 1 cut(s) 281
HgaI GACGC 2 cut(s) 173, 217
HhaI GCGC 1 cut(s) 194
Hin1I GRCGYC 1 cut(s) 209
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HpaII CCGG 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 180, 348
Hsp92I GRCGYC 1 cut(s) 209
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 3 cut(s) 150, 220, 316
LmnI GCTCC 1 cut(s) 255
LweI GCATC 1 cut(s) 73
MaeIII GTNAC 3 cut(s) 132, 256, 286
MalI GATC 3 cut(s) 152, 222, 318
MboI GATC 3 cut(s) 150, 220, 316
MboII GAAGA 2 cut(s) 110, 311
MlsI TGGCCA 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 294
MnlI CCTC 4 cut(s) 16, 24, 88, 285
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 40
Msp20I TGGCCA 1 cut(s) 294
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 62, 225
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 62, 225
NdeII GATC 3 cut(s) 150, 220, 316
NmuCI GTSAC 2 cut(s) 256, 286
PctI GAATGC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 60, 223
PspGI CCWGG 2 cut(s) 60, 223
PspPI GGNCC 2 cut(s) 58, 267
PspPPI RGGWCCY 1 cut(s) 58
PstNI CAGNNNCTG 2 cut(s) 61, 290
RsaI GTAC 2 cut(s) 229, 311
RsaNI GTAC 2 cut(s) 228, 310
RseI CAYNNNNRTG 1 cut(s) 40
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 3 cut(s) 150, 220, 316
Sau96I GGNCC 2 cut(s) 58, 267
ScrFI CCNGG 2 cut(s) 62, 225
SetI ASST 6 cut(s) 19, 27, 63, 178, 252, 315
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 40
SsiI CCGC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 60, 223
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 112
TauI GCSGC 1 cut(s) 197
TscAI CASTG 2 cut(s) 265, 295
TseFI GTSAC 2 cut(s) 256, 286
Tsp45I GTSAC 2 cut(s) 256, 286
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 265, 295
VpaK11BI GGWCC 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.