Rh5CG111100

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000181
Physical Location & Seq
Reverse (-)
9133098 .. 9138106
5009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG111100.1

Sequence Viewer

Length: 534 bp
ATGTCTCTGTGCGACGAAAACAACGTGATGGACCTCTCTGCTTTCCGATTGGCGGTGCAAGGCGCCTTCAACCCCGATAGTACCAAGTTTGTGCCTATCATCAGGCCATGTGAACCTGGTGCTTTAGATCGTGTGTCACTCCTCCGTCATATGGCAAACACTGGACCAAAGGGCACTCACAGTATGACAATCCCCGTTCAGAGGCCACGCCCAGTCCGCCCAGTCCGCCCTCCCGAAGGTAGATGTTTGATTTGTTCCTTGGATGAACACACATCATCTGAATGCCCGTACAACGCTGAAGTTCCAAAGAACGCAACTGTTGGCAGGGGCTGTGACGTATTTTGTAAGGTTTGTGATGGCTTGTTTTCTGGGCGCTCTTGTAACCAAGATTCATGGCGTGCGAAGCTCAAGTTTTGTAATTTCTGTTCTAACTACGGTGAACACTGGATGCAACAGTGCCCGCTCAACTCTCTTAAAGTGATGCTCGATTGTGGTCCTAGCTCTGGATATTTGAGGAAAAAAAGTGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.58

Weight (kDa)

8.71

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 463
AciI CCGC 4 cut(s) 53, 217, 226, 461
AcuI CTGAAG 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 82, 290
AfiI CCNNNNNNNGG 5 cut(s) 52, 151, 201, 236, 503
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 406, 501
AluI AGCT 2 cut(s) 406, 501
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 330
AoxI GGCC 2 cut(s) 104, 203
AspLEI GCGC 2 cut(s) 65, 375
AspS9I GGNCC 3 cut(s) 31, 164, 494
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 3 cut(s) 31, 164, 494
BaeGI GKGCMC 2 cut(s) 176, 461
BanI GGYRCC 1 cut(s) 62
BccI CCATC 2 cut(s) 22, 350
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 498
BfoI RGCGCY 2 cut(s) 66, 376
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 3 cut(s) 31, 164, 494
BmgT120I GGNCC 3 cut(s) 31, 164, 494
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 2 cut(s) 206, 215
BmsI GCATC 2 cut(s) 438, 471
BmuI ACTGGG 2 cut(s) 206, 215
BpuEI CTTGAG 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 151, 201, 236, 503
Bse1I ACTGG 4 cut(s) 166, 212, 221, 449
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 268, 453
BseLI CCNNNNNNNGG 5 cut(s) 52, 151, 201, 236, 503
BseNI ACTGG 4 cut(s) 166, 212, 221, 449
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 2 cut(s) 176, 461
BshFI GGCC 2 cut(s) 106, 205
BshNI GGYRCC 1 cut(s) 62
BslI CCNNNNNNNGG 5 cut(s) 52, 151, 201, 236, 503
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 2 cut(s) 106, 205
Bsp1286I GDGCHC 2 cut(s) 176, 461
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 4 cut(s) 53, 217, 226, 461
BspANI GGCC 2 cut(s) 106, 205
BspLI GGNNCC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 463
BsrI ACTGG 4 cut(s) 166, 212, 221, 449
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 4 cut(s) 182, 319, 437, 456
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 399, 461
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 268, 453
BstH2I RGCGCY 2 cut(s) 66, 376
BstHHI GCGC 2 cut(s) 65, 375
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 3 cut(s) 216, 225, 403
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSLI GKGCMC 2 cut(s) 176, 461
BsuRI GGCC 2 cut(s) 106, 205
BtsCI GGATG 2 cut(s) 268, 453
BtsIMutI CAGTG 3 cut(s) 159, 442, 461
Cac8I GCNNGC 2 cut(s) 399, 461
CaiI CAGNNNCTG 1 cut(s) 330
CfoI GCGC 2 cut(s) 65, 375
Cfr13I GGNCC 3 cut(s) 31, 164, 494
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 2 cut(s) 81, 289
CviAII CATG 2 cut(s) 108, 393
CviJI RGCY 6 cut(s) 106, 205, 330, 360, 406, 501
CviKI_1 RGCY 6 cut(s) 106, 205, 330, 360, 406, 501
CviQI GTAC 2 cut(s) 81, 289
DinI GGCGCC 1 cut(s) 64
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EciI GGCGGA 2 cut(s) 206, 215
Eco130I CCWWGG 1 cut(s) 258
Eco47I GGWCC 3 cut(s) 31, 164, 494
Eco57I CTGAAG 1 cut(s) 318
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 2 cut(s) 111, 396
FaiI YATR 5 cut(s) 109, 150, 152, 185, 394
FatI CATG 2 cut(s) 107, 392
FauI CCCGC 1 cut(s) 468
FauNDI CATATG 1 cut(s) 150
FokI GGATG 2 cut(s) 275, 460
FspBI CTAG 1 cut(s) 498
GlaI GCGC 2 cut(s) 64, 374
HaeII RGCGCY 2 cut(s) 66, 376
HaeIII GGCC 2 cut(s) 106, 205
HhaI GCGC 2 cut(s) 65, 375
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 2 cut(s) 111, 396
Hin6I GCGC 2 cut(s) 63, 373
HinP1I GCGC 2 cut(s) 63, 373
HinfI GANTC 1 cut(s) 389
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 2 cut(s) 113, 440
Hpy188I TCNGA 3 cut(s) 47, 201, 280
Hpy188III TCNNGA 2 cut(s) 233, 504
Hpy8I GTNNAC 2 cut(s) 113, 440
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 76, 230
HpyCH4III ACNGT 4 cut(s) 182, 319, 437, 456
HpyCH4IV ACGT 2 cut(s) 24, 336
HpyCH4V TGCA 2 cut(s) 58, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 225, 403
HpySE526I ACGT 2 cut(s) 24, 336
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 111, 396
HspAI GCGC 2 cut(s) 63, 373
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 127
LweI GCATC 2 cut(s) 438, 471
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 1 cut(s) 498
MaeII ACGT 2 cut(s) 24, 336
MaeIII GTNAC 3 cut(s) 135, 332, 380
MalI GATC 1 cut(s) 129
MbiI CCGCTC 1 cut(s) 463
MboI GATC 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 176, 461
MluCI AATT 1 cut(s) 418
Mly113I GGCGCC 1 cut(s) 63
MnlI CCTC 5 cut(s) 44, 152, 195, 240, 507
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 216, 225, 403
NarI GGCGCC 1 cut(s) 63
NdeI CATATG 1 cut(s) 150
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 111, 396
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 135, 332
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 389
PluTI GGCGCC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 3 cut(s) 31, 164, 494
PsrI GAACNNNNNNTAC 2 cut(s) 409, 441
PstNI CAGNNNCTG 1 cut(s) 330
RsaI GTAC 2 cut(s) 82, 290
RsaNI GTAC 2 cut(s) 81, 289
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 474
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 3 cut(s) 31, 164, 494
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 2 cut(s) 176, 461
SetI ASST 8 cut(s) 27, 36, 118, 241, 339, 351, 408, 503
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 2 cut(s) 438, 471
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 3 cut(s) 31, 164, 494
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 1 cut(s) 418
SsiI CCGC 4 cut(s) 53, 217, 226, 461
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 4 cut(s) 182, 319, 437, 456
TaiI ACGT 2 cut(s) 27, 339
TaqI TCGA 1 cut(s) 486
TasI AATT 1 cut(s) 418
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 166, 449, 461
TseFI GTSAC 2 cut(s) 135, 332
Tsp45I GTSAC 2 cut(s) 135, 332
TspDTI ATGAA 2 cut(s) 279, 381
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 3 cut(s) 166, 449, 461
VpaK11BI GGWCC 3 cut(s) 31, 164, 494
XagI CCTNNNNNAGG 1 cut(s) 234
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.