Prupe.2G227900_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000181
Physical Location & Seq
Reverse (-)
25373381 .. 25374937
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G227900.1

Sequence Viewer

Length: 426 bp
ATGGAAAACAAGTCTAAACCACCAATGACTGCAGAACAAAGGAGGTTTGAAGAACTTATGACTTATTTCGTTAACAACACGTCACCAAATGTTGACTTTTTGAAGGCCCCGGACCCTCCTATCCCCGCTGGTGAATGTAGGTATTGTTTAAAGGTGGATGATCACATTACACAACTGTGCCCCTACAAGTATGATGTCCCAAAGAATGCAATTCTTGGCAAGGGCTGTTCGGTTCAGTGTGTTGTCTGCGGATGTAGGTTTAGAGACTCATGTTGTGCCCAATGCGGCCATACCCGTGGACGTGCAATCCTCATGGATTGTAGAATCTGTGGGAAGTCATATGACCACTGGCCTGATATGTGCCCGCAACGCGATTTGAATTCTTCTTTTACGTGCGACCCTTATACTGGTTATATTTCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

7.42

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 372
AciI CCGC 4 cut(s) 126, 249, 285, 365
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 3 cut(s) 50, 103, 379
AjiI CACGTC 2 cut(s) 81, 302
AleI CACNNNNGTG 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 258
AoxI GGCC 3 cut(s) 105, 286, 350
ApoI RAATTY 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 106, 112
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 75, 143
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 3 cut(s) 182, 280, 365
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 424
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 112
BmgBI CACGTC 2 cut(s) 81, 302
BmgT120I GGNCC 2 cut(s) 106, 112
BmiI GGNNCC 2 cut(s) 108, 114
BmrFI CCNGG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 108, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 2 cut(s) 353, 412
BseDI CCNNGG 2 cut(s) 108, 295
BseGI GGATG 2 cut(s) 163, 257
BseLI CCNNNNNNNGG 1 cut(s) 407
BseNI ACTGG 2 cut(s) 353, 412
BseSI GKGCMC 3 cut(s) 182, 280, 365
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 3 cut(s) 107, 288, 352
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 3 cut(s) 107, 288, 352
Bsp1286I GDGCHC 3 cut(s) 182, 280, 365
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 4 cut(s) 126, 249, 285, 365
BspANI GGCC 3 cut(s) 107, 288, 352
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 108, 114
BspMAI CTGCAG 1 cut(s) 34
BsrI ACTGG 2 cut(s) 353, 412
BssECI CCNNGG 2 cut(s) 108, 295
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 163, 257
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 3 cut(s) 182, 280, 365
BstUI CGCG 1 cut(s) 372
BstXI CCANNNNNNTGG 1 cut(s) 296
BsuRI GGCC 3 cut(s) 107, 288, 352
BtgI CCRYGG 1 cut(s) 295
BtrI CACGTC 2 cut(s) 81, 302
BtsCI GGATG 2 cut(s) 163, 257
BtsIMutI CAGTG 2 cut(s) 242, 346
Cac8I GCNNGC 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 106, 112
CviAII CATG 2 cut(s) 270, 313
CviJI RGCY 4 cut(s) 107, 225, 288, 352
CviKI_1 RGCY 4 cut(s) 107, 225, 288, 352
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 379
FaeI CATG 2 cut(s) 273, 316
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 269, 312
FauI CCCGC 2 cut(s) 133, 372
FauNDI CATATG 1 cut(s) 340
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 2 cut(s) 170, 264
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 424
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 107, 288, 352
HapII CCGG 1 cut(s) 110
Hin1II CATG 2 cut(s) 273, 316
HincII GTYRAC 2 cut(s) 73, 94
HindII GTYRAC 2 cut(s) 73, 94
HinfI GANTC 2 cut(s) 266, 324
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 75, 143
Hpy166II GTNNAC 3 cut(s) 73, 94, 299
Hpy8I GTNNAC 3 cut(s) 73, 94, 299
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 3 cut(s) 80, 301, 392
HpyCH4V TGCA 3 cut(s) 32, 209, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpySE526I ACGT 3 cut(s) 80, 301, 392
Hsp92II CATG 2 cut(s) 273, 316
Ksp22I TGATCA 1 cut(s) 160
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 114, 123, 334, 366, 393
MaeI CTAG 1 cut(s) 424
MaeII ACGT 3 cut(s) 80, 301, 392
MaeIII GTNAC 1 cut(s) 81
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 62, 375
MhlI GDGCHC 3 cut(s) 182, 280, 365
MluCI AATT 2 cut(s) 210, 379
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 3 cut(s) 36, 126, 320
MseI TTAA 2 cut(s) 72, 149
MslI CAYNNNNRTG 2 cut(s) 175, 294
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 211
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 369
NciI CCSGG 1 cut(s) 110
NdeI CATATG 1 cut(s) 340
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 273, 316
NlaIV GGNNCC 2 cut(s) 108, 114
NmuCI GTSAC 1 cut(s) 81
OliI CACNNNNGTG 1 cut(s) 175
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Ppu21I YACGTR 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 108, 114
PspPI GGNCC 2 cut(s) 106, 112
PstI CTGCAG 1 cut(s) 34
RseI CAYNNNNRTG 2 cut(s) 175, 294
SaqAI TTAA 2 cut(s) 72, 149
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 106, 112
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 3 cut(s) 182, 280, 365
SetI ASST 7 cut(s) 47, 83, 143, 156, 260, 304, 395
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 175, 294
Sse9I AATT 2 cut(s) 210, 379
SsiI CCGC 4 cut(s) 126, 249, 285, 365
SspMI CTAG 1 cut(s) 424
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 3 cut(s) 83, 304, 395
TasI AATT 2 cut(s) 210, 379
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 2 cut(s) 72, 149
Tru9I TTAA 2 cut(s) 72, 149
TscAI CASTG 2 cut(s) 242, 353
TseFI GTSAC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 81
TspRI CASTG 2 cut(s) 242, 353
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 379
XspI CTAG 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.