Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Forward (+)

17861545 .. 17862189

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG094400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAACCTGATAAGTATAGGATGGTATAGAAGAAAGAGGTGTAAGGCTGGTAATTTGGAGGTTAAGCAGGTTTCAGGGACACAGTTGTTGTACAGGATTTGCGGATCGGGATGGTCTAGTGGGTCTGCTGGGTTTGAAGAGAAAAGGGACTCTGCTTTTGACAAATTAGAGAGTGGGATCAAGAATGGTAGTGTTTTGTTCTGTACTGGGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

71

Amino Acids

7.75

Weight (kDa)

9.45

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	2 cut(s)	112, 185
AfaI	GTAC	2 cut(s)	92, 205
AgsI	TTSAA	1 cut(s)	137
AlwI	GGATC	2 cut(s)	112, 185
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
BccI	CCATC	2 cut(s)	15, 105
BfaI	CTAG	2 cut(s)	117, 214
BfuAI	ACCTGC	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	26, 116
BseNI	ACTGG	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	128
BslFI	GGGAC	2 cut(s)	91, 161
BsmFI	GGGAC	2 cut(s)	91, 161
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	104, 177
BspACI	CCGC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	112, 185
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	104, 177
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	26, 116
BstKTI	GATC	2 cut(s)	107, 180
BstMBI	GATC	2 cut(s)	104, 177
BtsCI	GGATG	2 cut(s)	26, 116
BveI	ACCTGC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	91, 204
CviJI	RGCY	2 cut(s)	47, 213
CviKI_1	RGCY	2 cut(s)	47, 213
CviQI	GTAC	2 cut(s)	91, 204
DpnI	GATC	2 cut(s)	106, 179
DpnII	GATC	2 cut(s)	104, 177
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
FaiI	YATR	2 cut(s)	17, 27
FaqI	GGGAC	2 cut(s)	91, 161
FokI	GGATG	2 cut(s)	33, 123
FspBI	CTAG	2 cut(s)	117, 214
GsaI	CCCAGC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	108, 181
HpyCH4III	ACNGT	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	104, 177
LpnPI	CCDG	7 cut(s)	20, 33, 53, 60, 79, 114, 192
MaeI	CTAG	2 cut(s)	117, 214
MalI	GATC	2 cut(s)	106, 179
MboI	GATC	2 cut(s)	104, 177
MboII	GAAGA	2 cut(s)	42, 149
MluCI	AATT	2 cut(s)	52, 164
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	2 cut(s)	30, 52
MseI	TTAA	1 cut(s)	63
NdeII	GATC	2 cut(s)	104, 177
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	128
RsaI	GTAC	2 cut(s)	92, 205
RsaNI	GTAC	2 cut(s)	91, 204
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	104, 177
SchI	GAGTC	1 cut(s)	143
SetI	ASST	4 cut(s)	9, 41, 63, 72
SgeI	CNNG	9 cut(s)	19, 60, 80, 87, 106, 120, 129, 141, 193
Sse9I	AATT	2 cut(s)	52, 164
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	2 cut(s)	117, 214
TaaI	ACNGT	1 cut(s)	84
TasI	AATT	2 cut(s)	52, 164
TatI	WGTACW	2 cut(s)	90, 203
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	2 cut(s)	117, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.