Rh5BG155300

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000181
Physical Location & Seq
Forward (+)
15890875 .. 15896492
5618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG155300.1

Sequence Viewer

Length: 546 bp
ATGTATTGTACAAAGGTGAGGGAACACGGTACTGCATTTTGCTCCTACACAAGACGTGTCCCAAAGAATGCATCTGTTGGCCATGGCTGTGAAGTAGTTTGTAGGAACTGTGGAGGTCCGTTTTCAGGCACCTGTTGTAGTCTAGATGAAGGCCGTGCTATTCTCAAAGAGTGTTTAATTTGTGGAATGTACGGTGACCACTGGCCTAGAGGGTGCCCACGCAACAATGGAGTCGACAAGAAATTTTTGGACCTTCCTCCTGTTGAACAGAAGGAGCCTGCAAAGCCAGCCTCAGTTACAAGCAATGCTGTCAAAGACAATGACTCGGAGGGTGCCCAGAGTGATACACCACACCCTACAAAGAAGGGAAAGACACCTGCTACTGATAAATCGAAGGCAGCAACTCCAAAGTCTGCTGGTGGTAATTTCTTTTTTGTGTCCTGCAACAAGTCATTTGGTTCCGAGGGTGGTCTTCAGTCTCACAAGGACAACGATAGTGCTAAAAAGAAGAATGGAGATGTCGCTGAAGCACGGGCTTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.32

Weight (kDa)

8.81

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 3 cut(s) 128, 213, 332
AccI GTMKAC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 458, 546
AfaI GTAC 3 cut(s) 10, 31, 191
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 1 cut(s) 266
AjiI CACGTC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 483
AoxI GGCC 3 cut(s) 79, 151, 203
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 116, 250
AsuHPI GGTGA 2 cut(s) 28, 206
AvaII GGWCC 2 cut(s) 116, 250
BaeGI GKGCMC 2 cut(s) 218, 337
BalI TGGCCA 1 cut(s) 81
BanI GGYRCC 3 cut(s) 128, 213, 332
BbsI GAAGAC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 2 cut(s) 143, 207
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme18I GGWCC 2 cut(s) 116, 250
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 116, 250
BmiI GGNNCC 5 cut(s) 130, 215, 276, 334, 460
BmsI GCATC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 82, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 82, 462
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 206
BseSI GKGCMC 2 cut(s) 218, 337
BseXI GCAGC 1 cut(s) 410
BshFI GGCC 3 cut(s) 81, 153, 205
BshNI GGYRCC 3 cut(s) 128, 213, 332
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 3 cut(s) 81, 153, 205
Bsp1286I GDGCHC 2 cut(s) 218, 337
Bsp1407I TGTACA 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 82
BspANI GGCC 3 cut(s) 81, 153, 205
BspCNI CTCAG 1 cut(s) 305
BspLI GGNNCC 5 cut(s) 130, 215, 276, 334, 460
BspMI ACCTGC 1 cut(s) 385
BspT107I GGYRCC 3 cut(s) 128, 213, 332
BsrDI GCAATG 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 8
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 82, 462
BssT1I CCWWGG 1 cut(s) 82
Bst4CI ACNGT 3 cut(s) 29, 110, 194
BstAUI TGTACA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 279, 288
BstDEI CTNAG 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 82
BstEII GGTNACC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 483
BstMWI GCNNNNNNNGC 2 cut(s) 283, 287
BstPI GGTNACC 1 cut(s) 194
BstSLI GKGCMC 2 cut(s) 218, 337
BstV1I GCAGC 1 cut(s) 410
BstV2I GAAGAC 1 cut(s) 464
BsuRI GGCC 3 cut(s) 81, 153, 205
BtgI CCRYGG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 279, 288
Cfr13I GGNCC 2 cut(s) 116, 250
Csp6I GTAC 3 cut(s) 9, 30, 190
CviAII CATG 1 cut(s) 83
CviJI RGCY 8 cut(s) 81, 87, 153, 205, 277, 286, 290, 536
CviKI_1 RGCY 8 cut(s) 81, 87, 153, 205, 277, 286, 290, 536
CviQI GTAC 3 cut(s) 9, 30, 190
DdeI CTNAG 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 116, 250
Eco57I CTGAAG 2 cut(s) 458, 546
Eco91I GGTNACC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 86
FaiI YATR 1 cut(s) 84
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 82
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 143, 207
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 3 cut(s) 81, 153, 205
Hin1II CATG 1 cut(s) 86
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 2 cut(s) 231, 323
HphI GGTGA 2 cut(s) 28, 206
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 328, 463
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 5 cut(s) 143, 263, 265, 358, 388
HpyCH4III ACNGT 3 cut(s) 29, 110, 194
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 35, 71, 281, 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 287
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 86
LmnI GCTCC 2 cut(s) 47, 274
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 143, 207
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 194, 295
MboII GAAGA 2 cut(s) 464, 520
MhlI GDGCHC 2 cut(s) 218, 337
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 3 cut(s) 177, 242, 424
MluNI TGGCCA 1 cut(s) 81
MlyI GAGTC 2 cut(s) 240, 317
MnlI CCTC 7 cut(s) 12, 107, 203, 267, 301, 322, 457
Mox20I TGGCCA 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 73
MscI TGGCCA 1 cut(s) 81
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 283, 287
NcoI CCATGG 1 cut(s) 82
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 5 cut(s) 130, 215, 276, 334, 460
NmuCI GTSAC 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 73
PaqCI CACCTGC 1 cut(s) 385
PctI GAATGC 1 cut(s) 73
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 2 cut(s) 239, 317
PpsI GAGTC 2 cut(s) 239, 317
PspEI GGTNACC 1 cut(s) 194
PspN4I GGNNCC 5 cut(s) 130, 215, 276, 334, 460
PspPI GGNCC 2 cut(s) 116, 250
RsaI GTAC 3 cut(s) 10, 31, 191
RsaNI GTAC 3 cut(s) 9, 30, 190
RseI CAYNNNNRTG 1 cut(s) 87
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 116, 250
SchI GAGTC 2 cut(s) 240, 317
SduI GDGCHC 2 cut(s) 218, 337
SetI ASST 6 cut(s) 18, 58, 118, 134, 255, 379
SfaNI GCATC 1 cut(s) 80
SinI GGWCC 2 cut(s) 116, 250
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 3 cut(s) 177, 242, 424
SspMI CTAG 2 cut(s) 143, 207
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 3 cut(s) 29, 110, 194
TaiI ACGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 234, 392
TasI AATT 3 cut(s) 177, 242, 424
TatI WGTACW 1 cut(s) 8
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 116, 250
XapI RAATTY 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 2 cut(s) 143, 207
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.