RchiOBHm_Chr5g0038581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000181
Physical Location & Seq
Forward (+)
33158429 .. 33160344
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31720

Sequence Viewer

Length: 579 bp
ATGTCTCTCGCGATCCCAGCCCAGCCGCCCAACCTCAACCTCATAGATCAGGACGACAAGATCCGCACTCATGGTACCGGCTCAAAAGCCTCGAAGCTTGCTGGAATGTCTTTGACTCAACAATTTGACGACTTGTTACTGGATCTGCCTCTCCCTCATGAACAAGAGGAAGAATCAGCAAAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGAAGAAGGAGAACAAGAGGATGAAGACGAGGAAGAAGAATTTGACATTTGTGATGTTTGCTTGAAGGACAAGGAACACTGTACATTTGATTGCCCGTACCTGGATTGCATCCTGAACCCAAAGACAACAACTGTTGGCAGTGGCTATGCAATAGTTTGTAGAGGATGCTATGCGTTGGGTGGCCATTCTGAAAGGGACTGGGTAGGACGTGCCGTTATGAAGTCTTGTTGTATTTGTGAGGTACCAGCTTCTCACTGGAGTTACGAATGCCCAAAGAACCCTGACCCTAGAAGGTATGACAATTCGAATAACCATAAGGTGTTGAAGCAAGAGGTCTATAGTGTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.78

Weight (kDa)

4.26

Isoelectric Point (pI)

77.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 74, 469
AccB1I GGYRCC 2 cut(s) 74, 469
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 26, 64
AclWI GGATC 3 cut(s) 7, 55, 150
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 4 cut(s) 76, 310, 326, 471
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 2 cut(s) 292, 553
AjiI CACGTC 1 cut(s) 437
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 2 cut(s) 97, 476
AluI AGCT 2 cut(s) 97, 476
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 7, 55, 150
AoxI GGCC 1 cut(s) 409
ApoI RAATTY 1 cut(s) 266
Asp718I GGTACC 2 cut(s) 74, 469
AsuII TTCGAA 1 cut(s) 533
BalI TGGCCA 1 cut(s) 411
BanI GGYRCC 2 cut(s) 74, 469
BbsI GAAGAC 1 cut(s) 258
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 565
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 76, 471
BmrFI CCNGG 1 cut(s) 329
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 2 cut(s) 345, 383
BmuI ACTGGG 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 505
Bpu14I TTCGAA 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 3 cut(s) 144, 431, 488
BseBI CCWGG 1 cut(s) 329
BseGI GGATG 4 cut(s) 232, 253, 336, 398
BseLI CCNNNNNNNGG 1 cut(s) 328
BseNI ACTGG 3 cut(s) 144, 431, 488
BseYI CCCAGC 2 cut(s) 16, 21
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 2 cut(s) 74, 469
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 533
Bsp1407I TGTACA 1 cut(s) 308
Bsp143I GATC 4 cut(s) 12, 46, 60, 142
Bsp68I TCGCGA 1 cut(s) 11
BspACI CCGC 2 cut(s) 26, 64
BspANI GGCC 1 cut(s) 411
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 76, 471
BspPI GGATC 3 cut(s) 7, 55, 150
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 2 cut(s) 74, 469
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 308
BsrI ACTGG 3 cut(s) 144, 431, 488
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 4 cut(s) 12, 46, 60, 142
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 308, 361
Bst6I CTCTTC 2 cut(s) 180, 216
BstAUI TGTACA 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 4 cut(s) 232, 253, 336, 398
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 4 cut(s) 15, 49, 63, 145
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 12, 46, 60, 142
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 327
BstSFI CTRYAG 1 cut(s) 565
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 60, 142
BstYI RGATCY 2 cut(s) 60, 142
BsuRI GGCC 1 cut(s) 411
BtrI CACGTC 1 cut(s) 437
BtsCI GGATG 4 cut(s) 232, 253, 336, 398
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 3 cut(s) 304, 373, 481
BtuMI TCGCGA 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 77
Csp6I GTAC 4 cut(s) 75, 309, 325, 470
CviAII CATG 3 cut(s) 71, 158, 576
CviJI RGCY 8 cut(s) 20, 25, 81, 89, 97, 372, 411, 476
CviKI_1 RGCY 8 cut(s) 20, 25, 81, 89, 97, 372, 411, 476
CviQI GTAC 4 cut(s) 75, 309, 325, 470
DpnI GATC 4 cut(s) 14, 48, 62, 144
DpnII GATC 4 cut(s) 12, 46, 60, 142
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 180, 216
EarI CTCTTC 2 cut(s) 180, 216
EcoRII CCWGG 1 cut(s) 327
FaeI CATG 3 cut(s) 74, 161, 579
FaqI GGGAC 1 cut(s) 437
FatI CATG 3 cut(s) 70, 157, 575
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 4 cut(s) 239, 260, 323, 405
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 516
GluI GCNGC 1 cut(s) 26
GsaI CCCAGC 2 cut(s) 20, 25
GsuI CTGGAG 1 cut(s) 505
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 78
Hin1II CATG 3 cut(s) 74, 161, 579
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 2 cut(s) 115, 173
HpaII CCGG 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 4 cut(s) 10, 50, 158, 340
HpyAV CCTTC 3 cut(s) 227, 286, 513
HpyCH4III ACNGT 2 cut(s) 308, 361
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 2 cut(s) 336, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 436
Hsp92II CATG 3 cut(s) 74, 161, 579
KpnI GGTACC 2 cut(s) 78, 473
Kzo9I GATC 4 cut(s) 12, 46, 60, 142
LweI GCATC 2 cut(s) 345, 383
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 2 cut(s) 135, 488
MalI GATC 4 cut(s) 14, 48, 62, 144
MboI GATC 4 cut(s) 12, 46, 60, 142
MflI RGATCY 2 cut(s) 60, 142
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 3 cut(s) 122, 266, 529
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 1 cut(s) 109
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 4 cut(s) 12, 46, 60, 142
NlaIII CATG 3 cut(s) 74, 161, 579
NlaIV GGNNCC 2 cut(s) 76, 471
NruI TCGCGA 1 cut(s) 11
NspV TTCGAA 1 cut(s) 533
PagI TCATGA 1 cut(s) 157
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 2 cut(s) 16, 21
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 76, 471
PsuI RGATCY 2 cut(s) 60, 142
RruI TCGCGA 1 cut(s) 11
RsaI GTAC 4 cut(s) 76, 310, 326, 471
RsaNI GTAC 4 cut(s) 75, 309, 325, 470
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 4 cut(s) 12, 46, 60, 142
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 329
SfaNI GCATC 2 cut(s) 345, 383
SfcI CTRYAG 1 cut(s) 565
SfuI TTCGAA 1 cut(s) 533
Sse9I AATT 3 cut(s) 122, 266, 529
SsiI CCGC 2 cut(s) 26, 64
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 308, 361
TaiI ACGT 1 cut(s) 439
TaqI TCGA 2 cut(s) 92, 533
TasI AATT 3 cut(s) 122, 266, 529
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 3 cut(s) 311, 373, 488
TspDTI ATGAA 4 cut(s) 174, 243, 264, 461
TspRI CASTG 3 cut(s) 311, 373, 488
XapI RAATTY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.