Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Forward (+)

23145662 .. 23149275

Gene Structure 3614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCGACGATCGAGCATCACTGTTATTTTAGCAGAGTGTTGCAAAGAGAAACAATTGAACCCATACCAGGTCGGGAAGACTGGCTGCAGATTTCATTTTTGCCCCTCAAGAAAACCCTCTGCATATATGATGATCCAACGGACTGTACTTGTGAGGAATCCTCTGTACCACCTGATCGCATAGGCCTTTCAATCCACTACTCATGTCCAGACCACAGACAGCGGTACACAGCAGCGTTTCAATCGTTCCTTTCCCGAATGGGTATCCCACAACCGCAGCACTCAACTATCCTTGATAAAGTATTTCAAGCGATCCTCACGGCCTACCCCCAGCAAAACATTTGTGTGTTAATAGCCGACGTGACTGTGCGTTTCTTGGGTAGTTTTCATGATCTTGTTTCCATTGAGAGAATTATGTTGTTGGAGTGTCACAACTGTAGATTAGTCTTGAATTATTGGCATGGTGGTGAATTGCGCTCTGAAAACATACACTGCGGGATATTGACTATCATGGTAGGCTTTCATTGGGATCCTTGGGACTGTTTGTCCCTGCAACTAGATCATCAATTGAGAGTTTGCAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

195

Amino Acids

22.61

Weight (kDa)

5.96

Isoelectric Point (pI)

65.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	223, 275, 495
AclWI	GGATC	4 cut(s)	128, 307, 524, 537
AfaI	GTAC	3 cut(s)	148, 168, 227
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	5 cut(s)	59, 192, 242, 308, 451
AhdI	GACNNNNNGTC	1 cut(s)	544
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	67
AlwI	GGATC	4 cut(s)	128, 307, 524, 537
AoxI	GGCC	2 cut(s)	184, 321
ApeKI	GCWGC	4 cut(s)	85, 233, 277, 579
AspLEI	GCGC	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	72, 245, 289
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	557
BfmI	CTRYAG	2 cut(s)	86, 436
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	4 cut(s)	86, 234, 278, 580
BlsI	GCNGC	4 cut(s)	87, 235, 279, 581
Bme1390I	CCNGG	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmgBI	CACGTC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	72, 245, 289
BseYI	CCCAGC	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	186, 323
BsiEI	CGRYCG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	532, 551
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	532, 551
BsnI	GGCC	2 cut(s)	186, 323
Bsp143I	GATC	7 cut(s)	9, 133, 175, 312, 391, 529, 559
BspACI	CCGC	3 cut(s)	223, 275, 495
BspANI	GGCC	2 cut(s)	186, 323
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	4 cut(s)	128, 307, 524, 537
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	7 cut(s)	9, 133, 175, 312, 391, 529, 559
BssT1I	CCWWGG	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	5 cut(s)	23, 146, 367, 437, 542
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	7 cut(s)	12, 136, 178, 315, 394, 532, 562
BstMBI	GATC	7 cut(s)	9, 133, 175, 312, 391, 529, 559
BstMCI	CGRYCG	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	2 cut(s)	86, 436
BstV1I	GCAGC	3 cut(s)	72, 245, 289
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	186, 323
BtrI	CACGTC	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	19, 490
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	477
CsiI	ACCWGGT	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	147, 167, 226
CviAII	CATG	4 cut(s)	204, 389, 461, 511
CviJI	RGCY	5 cut(s)	85, 186, 323, 356, 519
CviKI_1	RGCY	5 cut(s)	85, 186, 323, 356, 519
CviQI	GTAC	3 cut(s)	147, 167, 226
DpnI	GATC	7 cut(s)	11, 135, 177, 314, 393, 531, 561
DpnII	GATC	7 cut(s)	9, 133, 175, 312, 391, 529, 559
DriI	GACNNNNNGTC	1 cut(s)	544
Eam1105I	GACNNNNNGTC	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	533
Eco147I	AGGCCT	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	4 cut(s)	207, 392, 464, 514
FaqI	GGGAC	2 cut(s)	532, 551
FatI	CATG	4 cut(s)	203, 388, 460, 510
FauI	CCCGC	1 cut(s)	488
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	86, 234, 278, 580
Fsp4HI	GCNGC	4 cut(s)	86, 234, 278, 580
FspBI	CTAG	1 cut(s)	557
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	4 cut(s)	86, 234, 278, 580
GsaI	CCCAGC	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	186, 323
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	4 cut(s)	207, 392, 464, 514
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	2 cut(s)	6, 228
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	6 cut(s)	74, 109, 209, 255, 389, 448
Hpy8I	GTNNAC	2 cut(s)	6, 228
Hpy99I	CGWCG	2 cut(s)	10, 362
HpyCH4III	ACNGT	5 cut(s)	23, 146, 367, 437, 542
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	5 cut(s)	43, 88, 123, 553, 579
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	207, 392, 464, 514
HspAI	GCGC	1 cut(s)	475
Kzo9I	GATC	7 cut(s)	9, 133, 175, 312, 391, 529, 559
LpnPI	CCDG	7 cut(s)	54, 67, 81, 186, 222, 344, 563
Lsp1109I	GCAGC	3 cut(s)	72, 245, 289
LweI	GCATC	1 cut(s)	25
MabI	ACCWGGT	1 cut(s)	67
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	361, 428
MalI	GATC	7 cut(s)	11, 135, 177, 314, 393, 531, 561
MboI	GATC	7 cut(s)	9, 133, 175, 312, 391, 529, 559
MboII	GAAGA	1 cut(s)	89
MfeI	CAATTG	2 cut(s)	54, 566
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	5 cut(s)	54, 411, 451, 470, 566
MmeI	TCCRAC	2 cut(s)	161, 402
MnlI	CCTC	5 cut(s)	116, 128, 148, 172, 326
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	2 cut(s)	344, 465
MspA1I	CMGCKG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	69
MunI	CAATTG	2 cut(s)	54, 566
MvaI	CCWGG	1 cut(s)	69
NdeII	GATC	7 cut(s)	9, 133, 175, 312, 391, 529, 559
NlaIII	CATG	4 cut(s)	207, 392, 464, 514
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	2 cut(s)	361, 428
PagI	TCATGA	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	87, 235, 279, 581
Ple19I	CGATCG	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	531
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	529
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	3 cut(s)	148, 168, 227
RsaNI	GTAC	3 cut(s)	147, 167, 226
RseI	CAYNNNNRTG	2 cut(s)	344, 465
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	4 cut(s)	86, 234, 278, 580
Sau3AI	GATC	7 cut(s)	9, 133, 175, 312, 391, 529, 559
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	3 cut(s)	73, 175, 363
SexAI	ACCWGGT	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	2 cut(s)	86, 436
SmiMI	CAYNNNNRTG	2 cut(s)	344, 465
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	5 cut(s)	54, 411, 451, 470, 566
SseBI	AGGCCT	1 cut(s)	186
SsiI	CCGC	3 cut(s)	223, 275, 495
SspMI	CTAG	1 cut(s)	557
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	5 cut(s)	23, 146, 367, 437, 542
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	5, 12
TasI	AATT	5 cut(s)	54, 411, 451, 470, 566
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	26, 497
TseFI	GTSAC	2 cut(s)	361, 428
TseI	GCWGC	4 cut(s)	85, 233, 277, 579
Tsp45I	GTSAC	2 cut(s)	361, 428
TspDTI	ATGAA	3 cut(s)	84, 377, 512
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	26, 497
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.