Rroxscaffold_5G00351680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000181
Physical Location & Seq
Reverse (-)
28188290 .. 28189604
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351680.1

Sequence Viewer

Length: 291 bp
ATGCGGGTTGATTCAAGATGCCAGCTTCAAGCAGTGATGGAAAAGTTGATTCCAGCTTCTTATTGTTCAGGAAAAGTTGAACAGAAGGAGCCTGCAAAGCCAGCTTCAGTTAAGAGCAATGCTGTCAAAGACGATGACCCAGAGGATGATCATGACAGTGACGATGAAGATGATGAAACCCCTACCCCTAAGAAGCCTGGATCTAAGAGAAGAGCCCAAGCCTCTGCATCAGCTAAAACTCCAGTTTCTGCTAAGAAGGCAAAGATAGATACTGGTACTTCCACATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.35

Weight (kDa)

5.81

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 3 cut(s) 15, 29, 80
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 4 cut(s) 25, 56, 104, 233
AluI AGCT 4 cut(s) 25, 56, 104, 233
AlwI GGATC 1 cut(s) 208
AlwNI CAGNNNCTG 1 cut(s) 248
BanII GRGCYC 1 cut(s) 217
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 198
BclI TGATCA 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 8, 236
BpmI CTGGAG 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 242, 277
Bse3DI GCAATG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 124
BseNI ACTGG 2 cut(s) 242, 277
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 148, 200
BspACI CCGC 1 cut(s) 4
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 208
BspQI GCTCTTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 2 cut(s) 242, 277
BssMI GATC 2 cut(s) 148, 200
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 23, 93, 102
BstDEI CTNAG 3 cut(s) 189, 204, 252
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 2 cut(s) 151, 203
BstMBI GATC 2 cut(s) 148, 200
BstMWI GCNNNNNNNGC 3 cut(s) 97, 101, 257
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 163
Cac8I GCNNGC 3 cut(s) 23, 93, 102
CaiI CAGNNNCTG 1 cut(s) 248
CciI TCATGA 1 cut(s) 151
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 152
CviJI RGCY 9 cut(s) 25, 56, 91, 100, 104, 196, 215, 221, 233
CviKI_1 RGCY 9 cut(s) 25, 56, 91, 100, 104, 196, 215, 221, 233
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 3 cut(s) 189, 204, 252
DpnI GATC 2 cut(s) 150, 202
DpnII GATC 2 cut(s) 148, 200
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 1 cut(s) 155
FaiI YATR 1 cut(s) 153
FatI CATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 148
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 225
Hin1II CATG 1 cut(s) 155
HinfI GANTC 2 cut(s) 11, 49
Hpy188III TCNNGA 3 cut(s) 15, 69, 152
HpyAV CCTTC 2 cut(s) 79, 250
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 95, 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 101, 257
HpyF3I CTNAG 3 cut(s) 189, 204, 252
Hsp92II CATG 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 200
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 88
LweI GCATC 2 cut(s) 8, 236
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 150, 202
MboI GATC 2 cut(s) 148, 200
MboII GAAGA 2 cut(s) 179, 222
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 217
MnlI CCTC 2 cut(s) 136, 232
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 97, 101, 257
NdeII GATC 2 cut(s) 148, 200
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 158
PagI TCATGA 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 11, 49
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 2 cut(s) 148, 200
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 217
SetI ASST 4 cut(s) 27, 58, 106, 235
SfaNI GCATC 2 cut(s) 8, 236
SmiMI CAYNNNNRTG 1 cut(s) 156
SsiI CCGC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 158
TfiI GAWTC 2 cut(s) 11, 49
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 39, 163
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 180, 189
TspRI CASTG 2 cut(s) 39, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.