Rroxscaffold_6G00421510

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000181
Physical Location & Seq
Forward (+)
42658044 .. 42660372
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421510.1

Sequence Viewer

Length: 585 bp
ATGAGCAAGAAAGCAGGTATGGAGGTGGCGAGGTCATCGGAATCTTTCCAAAAGCAGAACCTGGCCGTCGTCCCCAAGCCTGATGCCACCAAGGCGGAAGAACCAAAGGCTCGATGGCCTTATATGGATCCATGGCCTTATATCCGCAATTTACCTGATGGTAGGACGATCATAATCTCAAGGAAGAACCCACCTACTGAGCATCCTTGCGCTTATACCGAGATGCCCCCTGATGATCCTGGTACTTTTTCTGAAAAATCAAAGCTCCGTCTCCCTAGTTGGCCCTTCCCTCGTGCAAGAGTCACTCGCGAAATTCCTGCTGCATGTATGATTTGTTCCTTGGTGGATGAACACAGTTCAACTCAATGCCCGTACCTTGATCTTCTCCCGAAGAATGCAACTGTTAGCGGTGACTGTGACGTAGTTTGTACGGTTTGTTATCGTTTGTTTTCAGGGCACTGCTGTAACCAAGATGCTGGACGTGCTGAGCTCAGGTTATGTGATAATTGTATGAGGATTGGTGACCACCGGACATCTCAGTGCCCGGAGAAGAACAGGCGCTTAAGCTACTGGCAGTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.03

Weight (kDa)

8.44

Isoelectric Point (pI)

57.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 5
AccII CGCG 1 cut(s) 309
AciI CCGC 3 cut(s) 95, 145, 408
AclWI GGATC 3 cut(s) 122, 135, 230
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 312
AfaI GTAC 3 cut(s) 244, 374, 430
AflII CTTAAG 1 cut(s) 562
AgsI TTSAA 1 cut(s) 360
AjiI CACGTC 1 cut(s) 482
AjnI CCWGG 2 cut(s) 60, 238
AluBI AGCT 3 cut(s) 265, 490, 567
AluI AGCT 3 cut(s) 265, 490, 567
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 3 cut(s) 122, 135, 230
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 4 cut(s) 63, 116, 134, 281
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 312
AspLEI GCGC 2 cut(s) 212, 561
AspS9I GGNCC 1 cut(s) 282
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 2 cut(s) 422, 533
BaeGI GKGCMC 2 cut(s) 459, 545
BamHI GGATCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 108, 152
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 2 cut(s) 62, 240
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 562
BfrI CTTAAG 1 cut(s) 562
BfuAI ACCTGC 1 cut(s) 5
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 1 cut(s) 321
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 3 cut(s) 62, 240, 545
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 3 cut(s) 62, 240, 545
BmsI GCATC 4 cut(s) 73, 211, 213, 463
Bpu10I CCTNAGC 1 cut(s) 491
Bpu1102I GCTNAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 90, 131, 339
BsaWI WCCGGW 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 173
BseBI CCWGG 2 cut(s) 62, 240
BseDI CCNNGG 3 cut(s) 90, 131, 339
BseGI GGATG 2 cut(s) 202, 352
BseJI GATNNNNATC 1 cut(s) 173
BseMII CTCAG 4 cut(s) 189, 477, 505, 551
BseNI ACTGG 1 cut(s) 575
BseSI GKGCMC 2 cut(s) 459, 545
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 4 cut(s) 65, 118, 136, 283
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 2 cut(s) 529, 545
BslFI GGGAC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 275
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 4 cut(s) 65, 118, 136, 283
Bsp1286I GDGCHC 3 cut(s) 459, 492, 545
Bsp143I GATC 4 cut(s) 127, 168, 235, 379
Bsp1720I GCTNAGC 1 cut(s) 486
Bsp19I CCATGG 1 cut(s) 131
Bsp68I TCGCGA 1 cut(s) 309
BspACI CCGC 3 cut(s) 95, 145, 408
BspANI GGCC 4 cut(s) 65, 118, 136, 283
BspCNI CTCAG 4 cut(s) 190, 478, 504, 550
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 129
BspMI ACCTGC 1 cut(s) 5
BspPI GGATC 3 cut(s) 122, 135, 230
BspTI CTTAAG 1 cut(s) 562
BsrI ACTGG 1 cut(s) 575
BssECI CCNNGG 3 cut(s) 90, 131, 339
BssMI GATC 4 cut(s) 127, 168, 235, 379
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 3 cut(s) 90, 131, 339
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 62, 240
Bst4CI ACNGT 4 cut(s) 356, 403, 416, 433
BstAFI CTTAAG 1 cut(s) 562
BstDEI CTNAG 4 cut(s) 198, 486, 491, 537
BstDSI CCRYGG 1 cut(s) 131
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 2 cut(s) 202, 352
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 1 cut(s) 562
BstHHI GCGC 2 cut(s) 212, 561
BstKTI GATC 4 cut(s) 130, 171, 238, 382
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 4 cut(s) 127, 168, 235, 379
BstMWI GCNNNNNNNGC 2 cut(s) 92, 482
BstNI CCWGG 2 cut(s) 62, 240
BstNSI RCATGY 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 60, 238, 543
BstSLI GKGCMC 2 cut(s) 459, 545
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 4 cut(s) 65, 118, 136, 283
BtgI CCRYGG 1 cut(s) 131
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 2 cut(s) 202, 352
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 457, 545
BtuMI TCGCGA 1 cut(s) 309
BveI ACCTGC 1 cut(s) 5
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 2 cut(s) 212, 561
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 3 cut(s) 243, 373, 429
CviAII CATG 2 cut(s) 132, 324
CviJI RGCY 9 cut(s) 65, 79, 110, 118, 136, 265, 283, 490, 567
CviKI_1 RGCY 9 cut(s) 65, 79, 110, 118, 136, 265, 283, 490, 567
CviQI GTAC 3 cut(s) 243, 373, 429
DdeI CTNAG 4 cut(s) 198, 486, 491, 537
DpnI GATC 4 cut(s) 129, 170, 237, 381
DpnII GATC 4 cut(s) 127, 168, 235, 379
EaeI YGGCCR 1 cut(s) 63
EciI GGCGGA 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 3 cut(s) 90, 131, 339
Eco24I GRGCYC 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 490
Eco91I GGTNACC 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 490
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 60, 238
EcoT14I CCWWGG 3 cut(s) 90, 131, 339
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 3 cut(s) 90, 131, 339
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 2 cut(s) 135, 327
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 131, 323
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 2 cut(s) 189, 359
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 276
GlaI GCGC 2 cut(s) 211, 560
GluI GCNGC 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 562
HaeIII GGCC 4 cut(s) 65, 118, 136, 283
HapII CCGG 2 cut(s) 529, 545
HhaI GCGC 2 cut(s) 212, 561
Hin1II CATG 2 cut(s) 135, 327
Hin6I GCGC 2 cut(s) 210, 559
HinP1I GCGC 2 cut(s) 210, 559
HinfI GANTC 2 cut(s) 41, 300
HpaII CCGG 2 cut(s) 529, 545
HphI GGTGA 2 cut(s) 422, 533
Hpy188I TCNGA 2 cut(s) 40, 253
Hpy188III TCNNGA 2 cut(s) 308, 388
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 4 cut(s) 356, 403, 416, 433
HpyCH4IV ACGT 2 cut(s) 420, 481
HpyCH4V TGCA 3 cut(s) 296, 323, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 482
HpyF3I CTNAG 4 cut(s) 198, 486, 491, 537
HpySE526I ACGT 2 cut(s) 420, 481
Hsp92II CATG 2 cut(s) 135, 327
HspAI GCGC 2 cut(s) 210, 559
Kzo9I GATC 4 cut(s) 127, 168, 235, 379
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 4 cut(s) 73, 211, 213, 463
MaeI CTAG 1 cut(s) 276
MaeII ACGT 2 cut(s) 420, 481
MaeIII GTNAC 5 cut(s) 301, 410, 416, 464, 521
MalI GATC 4 cut(s) 129, 170, 237, 381
MboI GATC 4 cut(s) 127, 168, 235, 379
MboII GAAGA 5 cut(s) 110, 196, 374, 403, 562
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 3 cut(s) 459, 492, 545
MluCI AATT 3 cut(s) 148, 312, 505
MlyI GAGTC 1 cut(s) 309
MnlI CCTC 4 cut(s) 16, 24, 300, 507
MseI TTAA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 538
MspCI CTTAAG 1 cut(s) 562
MspI CCGG 2 cut(s) 529, 545
MspR9I CCNGG 3 cut(s) 62, 240, 545
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 2 cut(s) 62, 240
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 92, 482
NciI CCSGG 1 cut(s) 545
NcoI CCATGG 1 cut(s) 131
NdeII GATC 4 cut(s) 127, 168, 235, 379
NlaIII CATG 2 cut(s) 135, 327
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 4 cut(s) 301, 410, 416, 521
NruI TCGCGA 1 cut(s) 309
NspI RCATGY 1 cut(s) 327
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 60, 238
PspEI GGTNACC 1 cut(s) 521
PspGI CCWGG 2 cut(s) 60, 238
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 282
PsrI GAACNNNNNNTAC 2 cut(s) 319, 351
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 127
RruI TCGCGA 1 cut(s) 309
RsaI GTAC 3 cut(s) 244, 374, 430
RsaNI GTAC 3 cut(s) 243, 373, 429
RseI CAYNNNNRTG 1 cut(s) 538
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 4 cut(s) 127, 168, 235, 379
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 3 cut(s) 62, 240, 545
SduI GDGCHC 3 cut(s) 459, 492, 545
SfaNI GCATC 4 cut(s) 73, 211, 213, 463
SmiMI CAYNNNNRTG 1 cut(s) 538
SmlI CTYRAG 2 cut(s) 178, 562
SmoI CTYRAG 2 cut(s) 178, 562
Sse9I AATT 3 cut(s) 148, 312, 505
SsiI CCGC 3 cut(s) 95, 145, 408
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 60, 238, 543
StyI CCWWGG 3 cut(s) 90, 131, 339
TaaI ACNGT 4 cut(s) 356, 403, 416, 433
TaiI ACGT 2 cut(s) 423, 484
TaqI TCGA 1 cut(s) 112
TasI AATT 3 cut(s) 148, 312, 505
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 2 cut(s) 464, 545
TseFI GTSAC 4 cut(s) 301, 410, 416, 521
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 4 cut(s) 301, 410, 416, 521
TspDTI ATGAA 1 cut(s) 363
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 2 cut(s) 464, 545
Vha464I CTTAAG 1 cut(s) 562
XapI RAATTY 1 cut(s) 312
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.