RLG00000032147

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
11399102 .. 11400660
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032147

Sequence Viewer

Length: 363 bp
ATGGGCACGAAGACGGAAGGACCATATATTGGCACTTATTCTCTCCACAAGCTCCGTAGTAATACTGGTAAGTGTTTGGTTTGTTCCTCAGTAGACGACCACCCTACATCTCTATGCCCGTACCTGGATTTTCTCCCAGATGATGCAATTGTTAGCAGTGGGTGTGACTTGGTTTGTAATTTTTGTAGCAAGTCAAATGGAATTTGCAAATGTTGGAAAGAGGAAGGACAGTGTGTTCTTCTCAAGTTTTGTCGATTTTGTTCAAAGAGTGGAGAGCATTGGGGTTATATGTGCCCACGCCTTGATCTTTGTTCTTCTCCTGTGGACTCTCCTGATCAAACCTCAAGTGCACAGCCGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.13

Weight (kDa)

5.83

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 29
AccI GTMKAC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 29, 124
AgsI TTSAA 1 cut(s) 264
AjnI CCWGG 1 cut(s) 123
AleI CACNNNNGTG 1 cut(s) 355
AloI GAACNNNNNNTCC 2 cut(s) 219, 251
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 352
Alw44I GTGCAC 1 cut(s) 348
ApaLI GTGCAC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 20
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 3 cut(s) 8, 296, 352
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 125
BclI TGATCA 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 17
BpuEI CTTGAG 2 cut(s) 227, 328
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 124
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 125
BseLI CCNNNNNNNGG 2 cut(s) 29, 124
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 70
BseSI GKGCMC 3 cut(s) 8, 296, 352
BsiHKAI GWGCWC 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 29, 124
Bsp1286I GDGCHC 3 cut(s) 8, 296, 352
Bsp143I GATC 2 cut(s) 304, 334
BspCNI CTCAG 1 cut(s) 101
BsrI ACTGG 1 cut(s) 70
BssMI GATC 2 cut(s) 304, 334
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 88
BstKTI GATC 2 cut(s) 307, 337
BstMBI GATC 2 cut(s) 304, 334
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSLI GKGCMC 3 cut(s) 8, 296, 352
BstV2I GAAGAC 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 163, 236
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 2 cut(s) 52, 355
CviKI_1 RGCY 2 cut(s) 52, 355
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 88
DpnI GATC 2 cut(s) 306, 336
DpnII GATC 2 cut(s) 304, 334
Eco47I GGWCC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 123
FaiI YATR 5 cut(s) 25, 27, 115, 288, 290
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 93
HinfI GANTC 1 cut(s) 326
Hpy166II GTNNAC 3 cut(s) 94, 325, 350
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 3 cut(s) 94, 325, 350
HpyAV CCTTC 2 cut(s) 11, 218
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 146, 207, 350
HpyF3I CTNAG 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 304, 334
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 6 cut(s) 51, 110, 137, 150, 333, 345
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 306, 336
MboI GATC 2 cut(s) 304, 334
MboII GAAGA 3 cut(s) 22, 230, 306
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 3 cut(s) 8, 296, 352
MluCI AATT 3 cut(s) 147, 178, 201
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 3 cut(s) 97, 214, 352
MseI TTAA 1 cut(s) 361
MslI CAYNNNNRTG 2 cut(s) 112, 355
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 125
NdeII GATC 2 cut(s) 304, 334
NmuCI GTSAC 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 355
PflMI CCANNNNNTGG 1 cut(s) 29
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspPI GGNCC 1 cut(s) 20
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 2 cut(s) 112, 355
SaqAI TTAA 1 cut(s) 361
Sau3AI GATC 2 cut(s) 304, 334
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 3 cut(s) 8, 296, 352
SetI ASST 3 cut(s) 54, 126, 344
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 112, 355
SmlI CTYRAG 2 cut(s) 242, 343
SmoI CTYRAG 2 cut(s) 242, 343
Sse9I AATT 3 cut(s) 147, 178, 201
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 253
TasI AATT 3 cut(s) 147, 178, 201
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TscAI CASTG 2 cut(s) 163, 236
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspGWI ACGGA 2 cut(s) 29, 44
TspRI CASTG 2 cut(s) 163, 236
Van91I CCANNNNNTGG 1 cut(s) 29
VneI GTGCAC 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.