Rh5BG113500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000181
Physical Location & Seq
Forward (+)
10635537 .. 10641387
5851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG113500.1

Sequence Viewer

Length: 924 bp
ATGGCCGCCGTGCCAATCGATCCAGCCGATACAGTCAACCGCGACAATTCTCATGGTAGCAAGGGGGGCAAGGCCAAAAGACTCAAGTGGTTGGACATTGCTATGGAGGATCCCTCTGCGGCTTCTGAAGGCTCCAGTTCTTCTGCCATGGCCGCCGTGCATATTGATCCAGCTGATTCAATCAACCGCGACAATTCTCATGGTATGCCAAAGGAAGCCATGGCCACCGTGCATATCGATCCAGCTGATTCAATCAACCACGACAATTCTCATGGTAGCAAGGGTGGCAAGGCCAGAAGACTCAAGGGGTCGAACATTGCTATGGAAGGTCCCTGGGCGGCTTATAAAGGGCCCATTTCTTCTGGTAGCAAGGGTGGCAAGGCCAAGAGACTCAAGCTGAAACTCCTTGCTGTTGAGACTTATGATGGCCCCAGTTCTCTGGGCATGAAGGCAGAAGAACCAAATATTGGCACTTCTCCACTCCACAAGCTCCATAGTCATACTGGTGATGCAGAAGGACCAATGAGCACATTCTCAAAAAAAAAGAAAAAAGGACGAATAAGCACTTTCTTTGCGTCAGCCGCCCGTCGTAGGTCAATGTTCCGGATTAAGCCAGAATTCCGTCGTGGTAAGTGTTTGGTTTGTTCCTTGGTAGATGACCACCCTACATCTGTATGCCCGTACAAGACTTTTCTCCCAGAGGATGCAATCGTTAGCAGTGTGTGTGTCTTGCTTTGTAATTTATGTGGCAAGTCAGATGGACGTTGCGAATGTTATAAAGTGGAAGGACGGACTCTTGTTTTCAAGTTTTGTCATCTATGTTGCAGGTCATACCACTGGAGTACAGAGTGCCCATGCAGGGTTGCACTTAGTTCTCCTCCAGTGGACTCTCCTCATCAAACCTCTAGTGCAGAGCTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

33.06

Weight (kDa)

9.07

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 345, 777
Acc36I ACCTGC 1 cut(s) 816
AccB7I CCANNNNNTGG 1 cut(s) 467
AccII CGCG 2 cut(s) 42, 189
AccIII TCCGGA 1 cut(s) 603
AciI CCGC 7 cut(s) 6, 40, 119, 153, 187, 338, 582
AclWI GGATC 5 cut(s) 14, 104, 117, 161, 233
AcoI YGGCCR 3 cut(s) 3, 150, 222
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 2 cut(s) 683, 844
AfiI CCNNNNNNNGG 3 cut(s) 467, 591, 859
AgsI TTSAA 3 cut(s) 180, 252, 805
AjnI CCWGG 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 5 cut(s) 173, 245, 397, 490, 916
AluI AGCT 5 cut(s) 173, 245, 397, 490, 916
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 2 cut(s) 382, 410
AlwI GGATC 5 cut(s) 14, 104, 117, 161, 233
Aor13HI TCCGGA 1 cut(s) 603
AoxI GGCC 8 cut(s) 3, 72, 150, 222, 291, 350, 381, 427
ApaI GGGCCC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 617
AspS9I GGNCC 5 cut(s) 329, 350, 351, 428, 518
AsuHPI GGTGA 1 cut(s) 518
AvaII GGWCC 2 cut(s) 329, 518
BaeGI GKGCMC 2 cut(s) 354, 854
BalI TGGCCA 1 cut(s) 224
BamHI GGATCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 530
BccI CCATC 2 cut(s) 419, 752
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 382, 410
BfaI CTAG 1 cut(s) 906
BfuAI ACCTGC 1 cut(s) 816
BisI GCNGC 5 cut(s) 6, 120, 153, 339, 582
BlsI GCNGC 5 cut(s) 7, 121, 154, 340, 583
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 2 cut(s) 329, 518
BmgT120I GGNCC 5 cut(s) 329, 350, 351, 428, 518
BmiI GGNNCC 5 cut(s) 111, 133, 331, 352, 430
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 499, 694
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 3 cut(s) 118, 859, 864
BpuEI CTTGAG 3 cut(s) 68, 287, 377
Bsa29I ATCGAT 2 cut(s) 18, 237
BsaJI CCNNGG 5 cut(s) 147, 219, 332, 333, 648
BsaWI WCCGGW 1 cut(s) 603
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 591, 859
Bse1I ACTGG 5 cut(s) 135, 432, 508, 842, 881
Bse3DI GCAATG 2 cut(s) 96, 315
BseAI TCCGGA 1 cut(s) 603
BseBI CCWGG 1 cut(s) 334
BseCI ATCGAT 2 cut(s) 18, 237
BseDI CCNNGG 5 cut(s) 147, 219, 332, 333, 648
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 3 cut(s) 467, 591, 859
BseMI GCAATG 2 cut(s) 96, 315
BseNI ACTGG 5 cut(s) 135, 432, 508, 842, 881
BseRI GAGGAG 2 cut(s) 867, 882
BseSI GKGCMC 2 cut(s) 354, 854
Bsh1236I CGCG 2 cut(s) 42, 189
BshFI GGCC 8 cut(s) 5, 74, 152, 224, 293, 352, 383, 429
BshVI ATCGAT 2 cut(s) 18, 237
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 1 cut(s) 604
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 3 cut(s) 467, 591, 859
BsmAI GTCTC 2 cut(s) 382, 410
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 8 cut(s) 5, 74, 152, 224, 293, 352, 383, 429
Bsp120I GGGCCC 1 cut(s) 350
Bsp1286I GDGCHC 3 cut(s) 354, 530, 854
Bsp13I TCCGGA 1 cut(s) 603
Bsp143I GATC 4 cut(s) 19, 109, 166, 238
Bsp19I CCATGG 2 cut(s) 147, 219
BspACI CCGC 7 cut(s) 6, 40, 119, 153, 187, 338, 582
BspANI GGCC 8 cut(s) 5, 74, 152, 224, 293, 352, 383, 429
BspDI ATCGAT 2 cut(s) 18, 237
BspEI TCCGGA 1 cut(s) 603
BspFNI CGCG 2 cut(s) 42, 189
BspLI GGNNCC 5 cut(s) 111, 133, 331, 352, 430
BspMI ACCTGC 1 cut(s) 816
BspPI GGATC 5 cut(s) 14, 104, 117, 161, 233
BsrDI GCAATG 2 cut(s) 96, 315
BsrI ACTGG 5 cut(s) 135, 432, 508, 842, 881
BssECI CCNNGG 5 cut(s) 147, 219, 332, 333, 648
BssMI GATC 4 cut(s) 19, 109, 166, 238
BssT1I CCWWGG 3 cut(s) 147, 219, 648
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 34, 229
BstDEI CTNAG 1 cut(s) 869
BstDSI CCRYGG 2 cut(s) 147, 219
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 2 cut(s) 42, 189
BstKTI GATC 4 cut(s) 22, 112, 169, 241
BstMAI GTCTC 2 cut(s) 382, 410
BstMBI GATC 4 cut(s) 19, 109, 166, 238
BstMWI GCNNNNNNNGC 5 cut(s) 66, 152, 285, 375, 581
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 332
BstSLI GKGCMC 2 cut(s) 354, 854
BstUI CGCG 2 cut(s) 42, 189
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 2 cut(s) 18, 237
BsuRI GGCC 8 cut(s) 5, 74, 152, 224, 293, 352, 383, 429
BsuTUI ATCGAT 2 cut(s) 18, 237
BtgI CCRYGG 2 cut(s) 147, 219
BtsCI GGATG 1 cut(s) 709
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 3 cut(s) 724, 835, 888
BveI ACCTGC 1 cut(s) 816
Cfr13I GGNCC 5 cut(s) 329, 350, 351, 428, 518
ClaI ATCGAT 2 cut(s) 18, 237
CseI GACGC 1 cut(s) 564
Csp6I GTAC 2 cut(s) 682, 843
CviAII CATG 7 cut(s) 53, 148, 200, 220, 272, 445, 855
CviQI GTAC 2 cut(s) 682, 843
DdeI CTNAG 1 cut(s) 869
DpnI GATC 4 cut(s) 21, 111, 168, 240
DpnII GATC 4 cut(s) 19, 109, 166, 238
EaeI YGGCCR 3 cut(s) 3, 150, 222
Eco130I CCWWGG 3 cut(s) 147, 219, 648
Eco24I GRGCYC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 329, 518
Eco57I CTGAAG 1 cut(s) 147
EcoO109I RGGNCCY 2 cut(s) 329, 350
EcoRI GAATTC 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 3 cut(s) 147, 219, 648
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 3 cut(s) 147, 219, 648
FaeI CATG 7 cut(s) 56, 151, 203, 223, 275, 448, 858
FaqI GGGAC 1 cut(s) 315
FatI CATG 7 cut(s) 52, 147, 199, 219, 271, 444, 854
Fnu4HI GCNGC 5 cut(s) 6, 120, 153, 339, 582
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 5 cut(s) 6, 120, 153, 339, 582
FspBI CTAG 1 cut(s) 906
GluI GCNGC 5 cut(s) 6, 120, 153, 339, 582
GsuI CTGGAG 3 cut(s) 118, 859, 864
HaeIII GGCC 8 cut(s) 5, 74, 152, 224, 293, 352, 383, 429
HapII CCGG 1 cut(s) 604
HgaI GACGC 1 cut(s) 564
Hin1II CATG 7 cut(s) 56, 151, 203, 223, 275, 448, 858
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 7 cut(s) 81, 176, 248, 300, 390, 793, 887
HpaII CCGG 1 cut(s) 604
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 2 cut(s) 37, 886
Hpy188I TCNGA 2 cut(s) 127, 757
Hpy188III TCNNGA 1 cut(s) 604
Hpy8I GTNNAC 2 cut(s) 37, 886
Hpy99I CGWCG 2 cut(s) 591, 627
HpyAV CCTTC 5 cut(s) 122, 320, 442, 509, 779
HpyCH4III ACNGT 2 cut(s) 34, 229
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 8 cut(s) 160, 232, 512, 707, 825, 858, 866, 911
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 152, 285, 375, 581
HpyF3I CTNAG 1 cut(s) 869
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 7 cut(s) 56, 151, 203, 223, 275, 448, 858
Kpn2I TCCGGA 1 cut(s) 603
Kzo9I GATC 4 cut(s) 19, 109, 166, 238
LmnI GCTCC 2 cut(s) 137, 495
LweI GCATC 2 cut(s) 499, 694
MaeI CTAG 1 cut(s) 906
MaeII ACGT 1 cut(s) 763
MalI GATC 4 cut(s) 21, 111, 168, 240
MboI GATC 4 cut(s) 19, 109, 166, 238
MboII GAAGA 4 cut(s) 132, 309, 351, 467
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 3 cut(s) 354, 530, 854
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 5 cut(s) 46, 193, 265, 617, 739
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 5 cut(s) 75, 294, 384, 787, 881
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 100, 124, 694, 888, 903, 913
Mox20I TGGCCA 1 cut(s) 224
MroI TCCGGA 1 cut(s) 603
MscI TGGCCA 1 cut(s) 224
MseI TTAA 2 cut(s) 609, 922
MslI CAYNNNNRTG 4 cut(s) 101, 320, 504, 673
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 2 cut(s) 173, 245
MspI CCGG 1 cut(s) 604
MspR9I CCNGG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 334
MvnI CGCG 2 cut(s) 42, 189
MwoI GCNNNNNNNGC 5 cut(s) 66, 152, 285, 375, 581
NcoI CCATGG 2 cut(s) 147, 219
NdeII GATC 4 cut(s) 19, 109, 166, 238
NlaIII CATG 7 cut(s) 56, 151, 203, 223, 275, 448, 858
NlaIV GGNNCC 5 cut(s) 111, 133, 331, 352, 430
PasI CCCWGGG 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 2 cut(s) 176, 248
PflMI CCANNNNNTGG 1 cut(s) 467
PkrI GCNGC 5 cut(s) 7, 121, 154, 340, 583
PleI GAGTC 5 cut(s) 75, 294, 384, 787, 881
PpsI GAGTC 5 cut(s) 75, 294, 384, 787, 881
PpuMI RGGWCCY 1 cut(s) 329
PsiI TTATAA 2 cut(s) 345, 777
Psp5II RGGWCCY 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 5 cut(s) 111, 133, 331, 352, 430
PspOMI GGGCCC 1 cut(s) 350
PspPI GGNCC 5 cut(s) 329, 350, 351, 428, 518
PspPPI RGGWCCY 1 cut(s) 329
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 2 cut(s) 173, 245
RsaI GTAC 2 cut(s) 683, 844
RsaNI GTAC 2 cut(s) 682, 843
RseI CAYNNNNRTG 4 cut(s) 101, 320, 504, 673
SaqAI TTAA 2 cut(s) 609, 922
SatI GCNGC 5 cut(s) 6, 120, 153, 339, 582
Sau3AI GATC 4 cut(s) 19, 109, 166, 238
Sau96I GGNCC 5 cut(s) 329, 350, 351, 428, 518
SchI GAGTC 5 cut(s) 75, 294, 384, 787, 881
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 3 cut(s) 354, 530, 854
SfaNI GCATC 2 cut(s) 499, 694
SinI GGWCC 2 cut(s) 329, 518
SmiMI CAYNNNNRTG 4 cut(s) 101, 320, 504, 673
SmlI CTYRAG 3 cut(s) 83, 302, 392
SmoI CTYRAG 3 cut(s) 83, 302, 392
Sse9I AATT 5 cut(s) 46, 193, 265, 617, 739
SsiI CCGC 7 cut(s) 6, 40, 119, 153, 187, 338, 582
SspI AATATT 1 cut(s) 466
SspMI CTAG 1 cut(s) 906
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 3 cut(s) 147, 219, 648
TaaI ACNGT 2 cut(s) 34, 229
TaiI ACGT 1 cut(s) 766
TaqI TCGA 3 cut(s) 18, 237, 311
TasI AATT 5 cut(s) 46, 193, 265, 617, 739
TatI WGTACW 1 cut(s) 842
TauI GCSGC 5 cut(s) 8, 122, 155, 341, 584
TfiI GAWTC 2 cut(s) 176, 248
Tru1I TTAA 2 cut(s) 609, 922
Tru9I TTAA 2 cut(s) 609, 922
TscAI CASTG 3 cut(s) 724, 842, 888
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 2 cut(s) 611, 805
TspRI CASTG 3 cut(s) 724, 842, 888
Van91I CCANNNNNTGG 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 329, 518
XapI RAATTY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XspI CTAG 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.