RchiOBHm_Chr5g0014841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000181
Physical Location & Seq
Forward (+)
10233461 .. 10239664
6204 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29527

Sequence Viewer

Length: 828 bp
ATGGCCCCCTGGTATATGGATCCCGCCAATACAATCAACCGCGACAAGTCTCATGGTAGCAAGGGCGGCAATGCCACAAGACTCAAGTGGAGATACCCACCCATAGAAGCCATAAATGTAGGAGAACCAAGGATCGTCACTTCTCTTCAGAAGTGCCCCAATAGTCCTGATAGCAATGGCAGCAAGGCCAACAGAAGCAAGTCTCCAGTGTTTACTATGGATGGTGTCACTTCTCTCCACAAGTGCCCCAGTAATCCTGGTAGCAAGGGTGGCAAGGCCAAAAGACTCAAGTGGACACACCTTGTGCAGGATTACGAAGGCCCCAGTTCTCCTGGCACAAAGGTGGAAGAACCAAGGATTGTCACTCCTCTCCAGAAGCGCCCCAGTAATCCTGGTATCAAGGGCGGCGTGGCCAAAAAACTCAAGTGGTCACACAGTGCTTTGGATTATGAAGGCTCCAGTTCTCCTGGCACGAAGACGGAAGGACCAAATATTGGTACTTCTTCTCTCCACAAGCTCCGTAGTAATACTGGTAAGTGTTTGGTTTGTTCCTCTGTAGACGACCACCCTACATCTCTATGCCCGTACCTGGATTTTCTCCCAGATGATGCAATTGTCAGCAGTGGGTGTGACTTAGTTTGTAATTTTTGTAGCAAGTCAAATGGAATTTGCAAATGTTGGAAAGAGGAAGGACAGTGTTTTCTTCTCAAGTTTTGTCGATTTTGTTCAAAGAGTGGAGAGCACTGGGGTTATATGTGCCCACGCCTTGATCTTTGTTCTTCTCCTGTGGACTTTCCTGGTCAAACCTCAAGTGCACAGCTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

29.86

Weight (kDa)

9.01

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 494
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 42
AciI CCGC 4 cut(s) 24, 40, 66, 405
AclWI GGATC 3 cut(s) 14, 27, 140
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 2 cut(s) 304, 437
AfaI GTAC 2 cut(s) 499, 587
AfiI CCNNNNNNNGG 3 cut(s) 307, 494, 589
AgsI TTSAA 1 cut(s) 729
AjnI CCWGG 7 cut(s) 8, 256, 331, 391, 466, 588, 796
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 2 cut(s) 517, 820
AluI AGCT 2 cut(s) 517, 820
Alw21I GWGCWC 2 cut(s) 744, 817
Alw26I GTCTC 2 cut(s) 54, 207
Alw44I GTGCAC 1 cut(s) 813
AlwI GGATC 3 cut(s) 14, 27, 140
AoxI GGCC 5 cut(s) 3, 186, 276, 319, 411
ApaLI GTGCAC 1 cut(s) 813
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 666
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 3 cut(s) 4, 320, 485
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 4 cut(s) 158, 248, 761, 817
BalI TGGCCA 1 cut(s) 413
BamHI GGATCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 2 cut(s) 744, 817
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
BcoDI GTCTC 2 cut(s) 54, 207
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 382
BisI GCNGC 3 cut(s) 67, 181, 406
BlsI GCNGC 3 cut(s) 68, 182, 407
Bme1390I CCNGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 3 cut(s) 4, 320, 485
BmiI GGNNCC 4 cut(s) 6, 21, 322, 457
BmrFI CCNGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
BmrI ACTGGG 4 cut(s) 243, 318, 378, 754
BmsI GCATC 1 cut(s) 598
BmuI ACTGGG 4 cut(s) 243, 318, 378, 754
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 3 cut(s) 189, 356, 442
BpuEI CTTGAG 5 cut(s) 68, 272, 407, 692, 793
BsaJI CCNNGG 3 cut(s) 8, 128, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 494, 589
Bse1I ACTGG 7 cut(s) 206, 249, 324, 384, 459, 535, 749
Bse3DI GCAATG 2 cut(s) 76, 181
BseBI CCWGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
BseDI CCNNGG 3 cut(s) 8, 128, 353
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 3 cut(s) 307, 494, 589
BseMI GCAATG 2 cut(s) 76, 181
BseNI ACTGG 7 cut(s) 206, 249, 324, 384, 459, 535, 749
BseRI GAGGAG 1 cut(s) 357
BseSI GKGCMC 4 cut(s) 158, 248, 761, 817
BseXI GCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 5 cut(s) 5, 188, 278, 321, 413
BsiHKAI GWGCWC 2 cut(s) 744, 817
BslI CCNNNNNNNGG 3 cut(s) 307, 494, 589
BsmAI GTCTC 2 cut(s) 54, 207
BsnI GGCC 5 cut(s) 5, 188, 278, 321, 413
Bsp1286I GDGCHC 5 cut(s) 158, 248, 744, 761, 817
Bsp143I GATC 3 cut(s) 19, 132, 769
BspACI CCGC 4 cut(s) 24, 40, 66, 405
BspANI GGCC 5 cut(s) 5, 188, 278, 321, 413
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 4 cut(s) 6, 21, 322, 457
BspPI GGATC 3 cut(s) 14, 27, 140
BsrDI GCAATG 2 cut(s) 76, 181
BsrI ACTGG 7 cut(s) 206, 249, 324, 384, 459, 535, 749
BssECI CCNNGG 3 cut(s) 8, 128, 353
BssMI GATC 3 cut(s) 19, 132, 769
BssT1I CCWWGG 2 cut(s) 128, 353
Bst2UI CCWGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
Bst4CI ACNGT 2 cut(s) 437, 696
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 634
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 42
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 3 cut(s) 22, 135, 772
BstMAI GTCTC 2 cut(s) 54, 207
BstMBI GATC 3 cut(s) 19, 132, 769
BstMWI GCNNNNNNNGC 3 cut(s) 66, 180, 270
BstNI CCWGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
BstSCI CCNGG 7 cut(s) 8, 256, 331, 391, 466, 588, 796
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 4 cut(s) 158, 248, 761, 817
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 5 cut(s) 5, 188, 278, 321, 413
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 628
BtsIMutI CAGTG 5 cut(s) 213, 442, 628, 701, 742
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 3 cut(s) 4, 320, 485
Csp6I GTAC 2 cut(s) 498, 586
CviAII CATG 1 cut(s) 53
CviJI RGCY 9 cut(s) 5, 110, 188, 278, 321, 413, 456, 517, 820
CviKI_1 RGCY 9 cut(s) 5, 110, 188, 278, 321, 413, 456, 517, 820
CviQI GTAC 2 cut(s) 498, 586
DdeI CTNAG 1 cut(s) 634
DpnI GATC 3 cut(s) 21, 134, 771
DpnII GATC 3 cut(s) 19, 132, 769
DraIII CACNNNGTG 2 cut(s) 304, 437
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 128, 353
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 320
EcoRII CCWGG 7 cut(s) 8, 256, 331, 391, 466, 588, 796
EcoT14I CCWWGG 2 cut(s) 128, 353
ErhI CCWWGG 2 cut(s) 128, 353
FaeI CATG 1 cut(s) 56
FatI CATG 1 cut(s) 52
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 3 cut(s) 67, 181, 406
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 67, 181, 406
GlaI GCGC 1 cut(s) 380
GluI GCNGC 3 cut(s) 67, 181, 406
GsuI CTGGAG 3 cut(s) 189, 356, 442
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 5 cut(s) 5, 188, 278, 321, 413
HhaI GCGC 1 cut(s) 381
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HinfI GANTC 2 cut(s) 81, 285
Hpy166II GTNNAC 5 cut(s) 213, 294, 559, 790, 815
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 167, 373
Hpy8I GTNNAC 5 cut(s) 213, 294, 559, 790, 815
HpyAV CCTTC 4 cut(s) 311, 446, 476, 683
HpyCH4III ACNGT 2 cut(s) 437, 696
HpyCH4V TGCA 4 cut(s) 307, 611, 672, 815
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 180, 270
HpyF3I CTNAG 1 cut(s) 634
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 19, 132, 769
LmnI GCTCC 2 cut(s) 461, 522
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 1 cut(s) 598
MaeIII GTNAC 5 cut(s) 136, 226, 361, 429, 629
MalI GATC 3 cut(s) 21, 134, 771
MboI GATC 3 cut(s) 19, 132, 769
MboII GAAGA 6 cut(s) 137, 359, 487, 495, 695, 771
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 5 cut(s) 158, 248, 744, 761, 817
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 3 cut(s) 612, 643, 666
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 2 cut(s) 75, 279
MmeI TCCRAC 1 cut(s) 659
MnlI CCTC 4 cut(s) 378, 562, 679, 817
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
MseI TTAA 1 cut(s) 826
MslI CAYNNNNRTG 3 cut(s) 341, 577, 820
Msp20I TGGCCA 1 cut(s) 413
MspR9I CCNGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
MunI CAATTG 1 cut(s) 612
MvaI CCWGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 66, 180, 270
NdeII GATC 3 cut(s) 19, 132, 769
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 4 cut(s) 6, 21, 322, 457
NmuCI GTSAC 5 cut(s) 136, 226, 361, 429, 629
OliI CACNNNNGTG 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 3 cut(s) 68, 182, 407
PleI GAGTC 2 cut(s) 75, 279
PpsI GAGTC 2 cut(s) 75, 279
Psp6I CCWGG 7 cut(s) 8, 256, 331, 391, 466, 588, 796
PspGI CCWGG 7 cut(s) 8, 256, 331, 391, 466, 588, 796
PspN4I GGNNCC 4 cut(s) 6, 21, 322, 457
PspPI GGNCC 3 cut(s) 4, 320, 485
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 2 cut(s) 499, 587
RsaNI GTAC 2 cut(s) 498, 586
RseI CAYNNNNRTG 3 cut(s) 341, 577, 820
SaqAI TTAA 1 cut(s) 826
SatI GCNGC 3 cut(s) 67, 181, 406
Sau3AI GATC 3 cut(s) 19, 132, 769
Sau96I GGNCC 3 cut(s) 4, 320, 485
SchI GAGTC 2 cut(s) 75, 279
ScrFI CCNGG 7 cut(s) 10, 258, 333, 393, 468, 590, 798
SduI GDGCHC 5 cut(s) 158, 248, 744, 761, 817
SetI ASST 6 cut(s) 303, 345, 519, 591, 809, 822
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 3 cut(s) 341, 577, 820
SmlI CTYRAG 5 cut(s) 83, 287, 422, 707, 808
SmoI CTYRAG 5 cut(s) 83, 287, 422, 707, 808
Sse9I AATT 3 cut(s) 612, 643, 666
SsiI CCGC 4 cut(s) 24, 40, 66, 405
SspI AATATT 1 cut(s) 493
StyD4I CCNGG 7 cut(s) 8, 256, 331, 391, 466, 588, 796
StyI CCWWGG 2 cut(s) 128, 353
TaaI ACNGT 2 cut(s) 437, 696
TaqI TCGA 1 cut(s) 718
TasI AATT 3 cut(s) 612, 643, 666
TauI GCSGC 2 cut(s) 69, 408
Tru1I TTAA 1 cut(s) 826
Tru9I TTAA 1 cut(s) 826
TscAI CASTG 5 cut(s) 213, 442, 628, 701, 749
TseFI GTSAC 5 cut(s) 136, 226, 361, 429, 629
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 5 cut(s) 136, 226, 361, 429, 629
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 2 cut(s) 494, 509
TspRI CASTG 5 cut(s) 213, 442, 628, 701, 749
Van91I CCANNNNNTGG 1 cut(s) 494
VneI GTGCAC 1 cut(s) 813
VpaK11BI GGWCC 1 cut(s) 485
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.