Rh5CG297600

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000181
Physical Location & Seq
Reverse (-)
32766383 .. 32769115
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG297600.1

Sequence Viewer

Length: 489 bp
ATGATATATATTAGGTATAACATATTTAACAATACCAGTGAATTTTTGCTCTCTTTGCAGGACCAAACAGCACTCGCAGTATGTCACGCATCATTCAGAAGTGGTATACAGTCCGCCCCCCTGATTTGCAAACTGCCAGAGGATAGATGTTTGATTTGTTGCTTGGATGAACACACTTCATTTCTATGCCCGTACAATGTTGAAGTCCCAAAGAATGCAATTGTAGGCAGCGGCTGTGACGTAATTTGTAAGGTTTGTGATCGTTTGTTCTTTGGGCGCTGTTGTAACCAAGATACAGGACGTGCTAAGCTCAAGTTTTGTGATATCTGTTTCAAGTATGGCGAACACTGGATGCTGCAGTGCCCACGCAAGCCTGAATGTGATCTCAGTGAAATTGGGGATTCTTCTGATCACTTAATTGCATGTGCAGCTACAGGTCGTCCTCCAATTGTAAATGTGAGGAAGAAAAAGAAGATAAATGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.19

Weight (kDa)

8.13

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 106
AciI CCGC 2 cut(s) 114, 231
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 2 cut(s) 203, 334
AjiI CACGTC 1 cut(s) 302
AluBI AGCT 2 cut(s) 310, 431
AluI AGCT 2 cut(s) 310, 431
AlwNI CAGNNNCTG 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 228, 355, 428
ApoI RAATTY 1 cut(s) 41
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 61
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 240, 342, 440
BclI TGATCA 1 cut(s) 409
BfmI CTRYAG 2 cut(s) 356, 432
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 4 cut(s) 229, 232, 356, 429
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 4 cut(s) 230, 233, 357, 430
Bme18I GGWCC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 61
BmsI GCATC 2 cut(s) 98, 342
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 36, 353
BseGI GGATG 2 cut(s) 172, 357
BseMII CTCAG 1 cut(s) 400
BseNI ACTGG 2 cut(s) 36, 353
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 3 cut(s) 240, 342, 440
BsgI GTGCAG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 365
Bsp143I GATC 3 cut(s) 259, 382, 409
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 2 cut(s) 114, 231
BspCNI CTCAG 1 cut(s) 399
BspMAI CTGCAG 1 cut(s) 360
BsrI ACTGG 2 cut(s) 36, 353
BssMI GATC 3 cut(s) 259, 382, 409
BssNAI GTATAC 1 cut(s) 107
Bst1107I GTATAC 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 306, 386
BstF5I GGATG 2 cut(s) 172, 357
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 3 cut(s) 262, 385, 412
BstMBI GATC 3 cut(s) 259, 382, 409
BstMWI GCNNNNNNNGC 2 cut(s) 55, 428
BstNSI RCATGY 1 cut(s) 426
BstSFI CTRYAG 2 cut(s) 356, 432
BstSLI GKGCMC 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 240, 342, 440
BstZ17I GTATAC 1 cut(s) 107
BtrI CACGTC 1 cut(s) 302
BtsCI GGATG 2 cut(s) 172, 357
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 4 cut(s) 43, 346, 365, 394
Cac8I GCNNGC 1 cut(s) 371
CaiI CAGNNNCTG 1 cut(s) 234
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 423
CviJI RGCY 4 cut(s) 234, 310, 373, 431
CviKI_1 RGCY 4 cut(s) 234, 310, 373, 431
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 306, 386
DpnI GATC 3 cut(s) 261, 384, 411
DpnII GATC 3 cut(s) 259, 382, 409
EciI GGCGGA 1 cut(s) 103
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 61
EcoRV GATATC 1 cut(s) 325
FaeI CATG 1 cut(s) 426
FaiI YATR 9 cut(s) 7, 9, 18, 23, 82, 107, 187, 339, 424
FaqI GGGAC 1 cut(s) 191
FatI CATG 1 cut(s) 422
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 229, 232, 356, 429
FokI GGATG 2 cut(s) 179, 364
Fsp4HI GCNGC 4 cut(s) 229, 232, 356, 429
GlaI GCGC 1 cut(s) 278
GluI GCNGC 4 cut(s) 229, 232, 356, 429
HaeII RGCGCY 1 cut(s) 280
HhaI GCGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 426
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 2 cut(s) 98, 409
Hpy8I GTNNAC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 2 cut(s) 240, 301
HpyCH4V TGCA 6 cut(s) 58, 129, 218, 358, 422, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 428
HpyF3I CTNAG 2 cut(s) 306, 386
HpySE526I ACGT 2 cut(s) 240, 301
Hsp92II CATG 1 cut(s) 426
HspAI GCGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 259, 382, 409
LpnPI CCDG 8 cut(s) 44, 49, 134, 150, 282, 334, 387, 420
Lsp1109I GCAGC 3 cut(s) 240, 342, 440
LweI GCATC 2 cut(s) 98, 342
MaeII ACGT 2 cut(s) 240, 301
MaeIII GTNAC 3 cut(s) 83, 236, 284
MalI GATC 3 cut(s) 261, 384, 411
MboI GATC 3 cut(s) 259, 382, 409
MboII GAAGA 3 cut(s) 396, 475, 484
MfeI CAATTG 2 cut(s) 219, 447
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 6 cut(s) 41, 219, 243, 393, 417, 447
MnlI CCTC 3 cut(s) 133, 453, 453
MseI TTAA 2 cut(s) 27, 416
MslI CAYNNNNRTG 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 231
MunI CAATTG 2 cut(s) 219, 447
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 55, 428
NdeII GATC 3 cut(s) 259, 382, 409
NlaIII CATG 1 cut(s) 426
NmuCI GTSAC 2 cut(s) 83, 236
NspI RCATGY 1 cut(s) 426
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 4 cut(s) 230, 233, 357, 430
PspPI GGNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 234
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 184
SaqAI TTAA 2 cut(s) 27, 416
SatI GCNGC 4 cut(s) 229, 232, 356, 429
Sau3AI GATC 3 cut(s) 259, 382, 409
Sau96I GGNCC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 365
SetI ASST 7 cut(s) 17, 243, 255, 304, 312, 433, 439
SfaNI GCATC 2 cut(s) 98, 342
SfcI CTRYAG 2 cut(s) 356, 432
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 6 cut(s) 41, 219, 243, 393, 417, 447
SsiI CCGC 2 cut(s) 114, 231
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 2 cut(s) 243, 304
TasI AATT 6 cut(s) 41, 219, 243, 393, 417, 447
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 27, 416
Tru9I TTAA 2 cut(s) 27, 416
TscAI CASTG 4 cut(s) 43, 353, 365, 394
TseFI GTSAC 2 cut(s) 83, 236
TseI GCWGC 3 cut(s) 228, 355, 428
Tsp45I GTSAC 2 cut(s) 83, 236
TspDTI ATGAA 2 cut(s) 168, 183
TspRI CASTG 4 cut(s) 43, 353, 365, 394
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 41
XceI RCATGY 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.