FvH4_5g26990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000181
Physical Location & Seq
Reverse (-)
18304597 .. 18306477
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26990.t1

Sequence Viewer

Length: 666 bp
ATGCCTCTCGATATACCAGTTATCACCGATGAGGATCTGAGCCGCTCACCAACGGCGAAGAATCGACTATTGTTTGCGGAAGATCTGATCCAGTTTCAGCGTGTCTATGATTCAAAACCAAGGGCTCTTGTTCACCTAATGGAGTTAGATGCGGAAGATCTGATCCAGATTCAGCGTCTCTATGATTCAAAACCAAGGGCTGCTGTTCCAGACGTAGAGAAGTGTGGAGGTCTAGTTAAGCTATTAATAGAGCTGCTTTACAAGAAACTCTATGAACCTGAGACTGATGATGAGGACTCAGATGGATCAGAAGAAGAAATGAAAATGAAAGATTGCAGAGTTTGTATGAAGGAGAACGGGGATCACATGTCATATGAATGCCCTTACTTGGAATGTATTCCAGATCCCAAGGACACACCTGTTGGGGAGGCCTATATGATAGTTTGCGCCCACTGCGGTTTGTCGAAACATGGGCACCAAGATGGAACCTGGGAAGGACGCGCGATATTTGATTTTCGTAAGTCCAGTTTATTCGTTCGACAGCCTGATGATGCTAACAACCAAGTTTTGGGGGAACATCATGCTACTTTGGAAGGAAGTCGTGCAACAATGGATCCTTGTAGGATTCCATTTGGTATTCCGAAAGCCTGGTGTGGTTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.03

Weight (kDa)

4.85

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 474
AccB7I CCANNNNNTGG 1 cut(s) 568
AccBSI CCGCTC 1 cut(s) 45
AccII CGCG 2 cut(s) 501, 503
AciI CCGC 4 cut(s) 43, 77, 152, 456
AclWI GGATC 8 cut(s) 42, 82, 157, 313, 369, 398, 608, 621
AfiI CCNNNNNNNGG 2 cut(s) 388, 568
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 2 cut(s) 114, 189
AjnI CCWGG 2 cut(s) 488, 647
AluBI AGCT 2 cut(s) 241, 253
AluI AGCT 2 cut(s) 241, 253
Alw26I GTCTC 2 cut(s) 182, 275
AlwI GGATC 8 cut(s) 42, 82, 157, 313, 369, 398, 608, 621
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 200, 253
AseI ATTAAT 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 2 cut(s) 449, 503
AsuHPI GGTGA 3 cut(s) 16, 39, 125
BaeGI GKGCMC 1 cut(s) 477
BamHI GGATCC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 474
BanII GRGCYC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 187, 240
BccI CCATC 2 cut(s) 296, 476
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 2 cut(s) 490, 649
BcoDI GTCTC 2 cut(s) 182, 275
BfaI CTAG 1 cut(s) 233
BglII AGATCT 2 cut(s) 82, 157
BisI GCNGC 3 cut(s) 43, 201, 254
BlsI GCNGC 3 cut(s) 44, 202, 255
Bme1390I CCNGG 2 cut(s) 490, 649
BmiI GGNNCC 3 cut(s) 476, 487, 615
BmrFI CCNGG 2 cut(s) 490, 649
BmsI GCATC 2 cut(s) 139, 541
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 119, 194, 408, 489
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 568
Bse1I ACTGG 3 cut(s) 17, 91, 525
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 2 cut(s) 490, 649
BseDI CCNNGG 4 cut(s) 119, 194, 408, 489
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 388, 568
BseMII CTCAG 3 cut(s) 29, 270, 312
BseNI ACTGG 3 cut(s) 17, 91, 525
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 2 cut(s) 187, 240
Bsh1236I CGCG 2 cut(s) 501, 503
BshFI GGCC 1 cut(s) 431
BshNI GGYRCC 1 cut(s) 474
BslI CCNNNNNNNGG 2 cut(s) 388, 568
BsmAI GTCTC 2 cut(s) 182, 275
BsmBI CGTCTC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 127, 477
Bsp143I GATC 9 cut(s) 34, 82, 87, 157, 162, 305, 361, 403, 613
BspACI CCGC 4 cut(s) 43, 77, 152, 456
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 3 cut(s) 30, 271, 311
BspFNI CGCG 2 cut(s) 501, 503
BspLI GGNNCC 3 cut(s) 476, 487, 615
BspPI GGATC 8 cut(s) 42, 82, 157, 313, 369, 398, 608, 621
BspT107I GGYRCC 1 cut(s) 474
BsrBI CCGCTC 1 cut(s) 45
BsrI ACTGG 3 cut(s) 17, 91, 525
BssECI CCNNGG 4 cut(s) 119, 194, 408, 489
BssMI GATC 9 cut(s) 34, 82, 87, 157, 162, 305, 361, 403, 613
BssT1I CCWWGG 3 cut(s) 119, 194, 408
Bst2UI CCWGG 2 cut(s) 490, 649
BstDEI CTNAG 3 cut(s) 38, 279, 298
BstFNI CGCG 2 cut(s) 501, 503
BstHHI GCGC 2 cut(s) 449, 503
BstKTI GATC 9 cut(s) 37, 85, 90, 160, 165, 308, 364, 406, 616
BstMAI GTCTC 2 cut(s) 182, 275
BstMBI GATC 9 cut(s) 34, 82, 87, 157, 162, 305, 361, 403, 613
BstMWI GCNNNNNNNGC 1 cut(s) 453
BstNI CCWGG 2 cut(s) 490, 649
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 488, 647
BstSLI GKGCMC 1 cut(s) 477
BstUI CGCG 2 cut(s) 501, 503
BstV1I GCAGC 2 cut(s) 187, 240
BstX2I RGATCY 5 cut(s) 34, 82, 157, 403, 613
BstYI RGATCY 5 cut(s) 34, 82, 157, 403, 613
BsuRI GGCC 1 cut(s) 431
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 451
CfoI GCGC 2 cut(s) 449, 503
CseI GACGC 2 cut(s) 164, 507
CviAII CATG 3 cut(s) 367, 470, 581
CviJI RGCY 8 cut(s) 42, 125, 200, 241, 253, 431, 544, 647
CviKI_1 RGCY 8 cut(s) 42, 125, 200, 241, 253, 431, 544, 647
DdeI CTNAG 3 cut(s) 38, 279, 298
DpnI GATC 9 cut(s) 36, 84, 89, 159, 164, 307, 363, 405, 615
DpnII GATC 9 cut(s) 34, 82, 87, 157, 162, 305, 361, 403, 613
Eco130I CCWWGG 3 cut(s) 119, 194, 408
Eco147I AGGCCT 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 488, 647
EcoT14I CCWWGG 3 cut(s) 119, 194, 408
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 3 cut(s) 119, 194, 408
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 3 cut(s) 370, 473, 584
FatI CATG 3 cut(s) 366, 469, 580
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 43, 201, 254
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 3 cut(s) 43, 201, 254
FspBI CTAG 1 cut(s) 233
GlaI GCGC 2 cut(s) 448, 502
GluI GCNGC 3 cut(s) 43, 201, 254
HaeIII GGCC 1 cut(s) 431
HgaI GACGC 2 cut(s) 164, 507
HhaI GCGC 2 cut(s) 449, 503
Hin1II CATG 3 cut(s) 370, 473, 584
Hin6I GCGC 2 cut(s) 447, 501
HinP1I GCGC 2 cut(s) 447, 501
HinfI GANTC 6 cut(s) 61, 110, 169, 185, 296, 625
HphI GGTGA 3 cut(s) 16, 39, 125
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 6 cut(s) 39, 87, 162, 301, 310, 642
Hpy188III TCNNGA 4 cut(s) 8, 166, 209, 401
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 3 cut(s) 343, 488, 587
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 336, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 453
HpyF3I CTNAG 3 cut(s) 38, 279, 298
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 370, 473, 584
HspAI GCGC 2 cut(s) 447, 501
Kzo9I GATC 9 cut(s) 34, 82, 87, 157, 162, 305, 361, 403, 613
Lsp1109I GCAGC 2 cut(s) 187, 240
LweI GCATC 2 cut(s) 139, 541
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 213
MalI GATC 9 cut(s) 36, 84, 89, 159, 164, 307, 363, 405, 615
MbiI CCGCTC 1 cut(s) 45
MboI GATC 9 cut(s) 34, 82, 87, 157, 162, 305, 361, 403, 613
MboII GAAGA 5 cut(s) 70, 92, 167, 323, 326
MflI RGATCY 5 cut(s) 34, 82, 157, 403, 613
MhlI GDGCHC 2 cut(s) 127, 477
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 5 cut(s) 15, 25, 221, 286, 421
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 2 cut(s) 237, 245
MslI CAYNNNNRTG 2 cut(s) 376, 480
MspR9I CCNGG 2 cut(s) 490, 649
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 2 cut(s) 490, 649
MvnI CGCG 2 cut(s) 501, 503
MwoI GCNNNNNNNGC 1 cut(s) 453
NdeI CATATG 1 cut(s) 373
NdeII GATC 9 cut(s) 34, 82, 87, 157, 162, 305, 361, 403, 613
NlaIII CATG 3 cut(s) 370, 473, 584
NlaIV GGNNCC 3 cut(s) 476, 487, 615
NspI RCATGY 1 cut(s) 370
PceI AGGCCT 1 cut(s) 431
PciI ACATGT 1 cut(s) 366
PctI GAATGC 1 cut(s) 383
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 5 cut(s) 61, 110, 169, 185, 625
PflMI CCANNNNNTGG 1 cut(s) 568
PkrI GCNGC 3 cut(s) 44, 202, 255
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PscI ACATGT 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 488, 647
PspGI CCWGG 2 cut(s) 488, 647
PspN4I GGNNCC 3 cut(s) 476, 487, 615
PsuI RGATCY 5 cut(s) 34, 82, 157, 403, 613
RseI CAYNNNNRTG 2 cut(s) 376, 480
SaqAI TTAA 2 cut(s) 237, 245
SatI GCNGC 3 cut(s) 43, 201, 254
Sau3AI GATC 9 cut(s) 34, 82, 87, 157, 162, 305, 361, 403, 613
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 490, 649
SduI GDGCHC 2 cut(s) 127, 477
SetI ASST 8 cut(s) 138, 216, 232, 243, 255, 280, 421, 491
SfaNI GCATC 2 cut(s) 139, 541
SmiMI CAYNNNNRTG 2 cut(s) 376, 480
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 4 cut(s) 43, 77, 152, 456
SspMI CTAG 1 cut(s) 233
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 2 cut(s) 488, 647
StyI CCWWGG 3 cut(s) 119, 194, 408
TaiI ACGT 1 cut(s) 216
TaqI TCGA 4 cut(s) 9, 64, 464, 538
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 5 cut(s) 61, 110, 169, 185, 625
Tru1I TTAA 2 cut(s) 237, 245
Tru9I TTAA 2 cut(s) 237, 245
TscAI CASTG 1 cut(s) 458
TseI GCWGC 2 cut(s) 200, 253
TspDTI ATGAA 6 cut(s) 288, 335, 341, 362, 390, 648
TspRI CASTG 1 cut(s) 458
Van91I CCANNNNNTGG 1 cut(s) 568
VspI ATTAAT 1 cut(s) 245
XceI RCATGY 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.