Rroxscaffold_2G00113390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000181
Physical Location & Seq
Forward (+)
38954700 .. 38957911
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113390.1

Sequence Viewer

Length: 639 bp
ATGTCTCTTGGAAAAGCAGCGAAGATCGACAATGATGTGTCTTTGTCGGACGAGGTAAAAAACAGTTTGGTGGAAAAGTTAGGAAACTCTTTTTGGGCATTCGTAGAAGATGATTCGTTGGAAGATGAAGTAGAGGATTTGTTGGTATGTGAAGAAAAGGCTTTGTTAATACATGAAGAAAAGGCTGTGTTGGACGAGCTAGCCAAGGCAAATTTGGAAGAGGAAGAAAAGGCTTCTGGTACCAATTCAGTAGGAGACAAGAAACCTTCTTTCACAGGTATAGACTATGAAAGTGCATATCCAGACAACACTGACTCTGATCGAGAATTTCTTAAAGATCTTGATTGCGCACCTATCGAACTAGGAGATGAAATGGATTGGGGAGTTTGTGAAGTCTGTTTGAAGGAAAATGAGCACCATTTTTCACATTGCCCGTACCTTTTCTTTGGTGTCCCGGACGGCGCAACTATTGGACCTGGGTATGCATTAGCCTGCAAGGAATGTTATGAGGTGGATGGCCACCCTGACAGACCCTGGGAAGCGCTCGCTGTTAGAAAGGTGTGTGACTTTTGCATGTGGCGTGCACATTGGACTGAAGACTGCCCATATCAGGTACCAGAGGGCGATCGTGCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.83

Weight (kDa)

4.27

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 349
Acc65I GGTACC 2 cut(s) 239, 613
AccB1I GGYRCC 2 cut(s) 239, 613
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 2 cut(s) 211, 326
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 3 cut(s) 241, 437, 615
AfeI AGCGCT 1 cut(s) 543
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 2 cut(s) 475, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 2 cut(s) 417, 586
Alw26I GTCTC 2 cut(s) 9, 249
Alw44I GTGCAC 1 cut(s) 582
AlwNI CAGNNNCTG 1 cut(s) 534
Aor51HI AGCGCT 1 cut(s) 543
AoxI GGCC 1 cut(s) 517
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 211, 326
Asp718I GGTACC 2 cut(s) 239, 613
AspLEI GCGC 3 cut(s) 350, 464, 544
AspS9I GGNCC 1 cut(s) 473
AsuC2I CCSGG 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 199
AvaII GGWCC 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 586
BalI TGGCCA 1 cut(s) 519
BanI GGYRCC 2 cut(s) 239, 613
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 2 cut(s) 417, 586
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 509
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 2 cut(s) 477, 535
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 9, 249
BfaI CTAG 2 cut(s) 200, 362
BfoI RGCGCY 1 cut(s) 545
BglII AGATCT 1 cut(s) 337
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 3 cut(s) 455, 477, 535
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 2 cut(s) 241, 615
BmrFI CCNGG 3 cut(s) 455, 477, 535
BmtI GCTAGC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 204, 476, 533, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 2 cut(s) 477, 535
BseDI CCNNGG 4 cut(s) 204, 476, 533, 534
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMI GCAATG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 1 cut(s) 519
BshNI GGYRCC 2 cut(s) 239, 613
BsiEI CGRYCG 1 cut(s) 628
BsiHKAI GWGCWC 2 cut(s) 417, 586
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 2 cut(s) 9, 249
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 1 cut(s) 519
Bsp1286I GDGCHC 2 cut(s) 417, 586
Bsp143I GATC 4 cut(s) 24, 319, 337, 625
BspANI GGCC 1 cut(s) 519
BspLI GGNNCC 2 cut(s) 241, 615
BspOI GCTAGC 1 cut(s) 203
BspT107I GGYRCC 2 cut(s) 239, 613
BsrDI GCAATG 1 cut(s) 427
BssECI CCNNGG 4 cut(s) 204, 476, 533, 534
BssMI GATC 4 cut(s) 24, 319, 337, 625
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 477, 535
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 4 cut(s) 201, 493, 546, 582
BstF5I GGATG 1 cut(s) 520
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 3 cut(s) 350, 464, 544
BstKTI GATC 4 cut(s) 27, 322, 340, 628
BstMAI GTCTC 2 cut(s) 9, 249
BstMBI GATC 4 cut(s) 24, 319, 337, 625
BstMCI CGRYCG 1 cut(s) 628
BstNI CCWGG 2 cut(s) 477, 535
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 3 cut(s) 453, 475, 533
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 519
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 4 cut(s) 201, 493, 546, 582
CaiI CAGNNNCTG 1 cut(s) 534
CfoI GCGC 3 cut(s) 350, 464, 544
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 3 cut(s) 240, 436, 614
CviAII CATG 2 cut(s) 173, 574
CviJI RGCY 7 cut(s) 161, 185, 199, 203, 233, 491, 519
CviKI_1 RGCY 7 cut(s) 161, 185, 199, 203, 233, 491, 519
CviQI GTAC 3 cut(s) 240, 436, 614
DpnI GATC 4 cut(s) 26, 321, 339, 627
DpnII GATC 4 cut(s) 24, 319, 337, 625
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 473
Eco47III AGCGCT 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 615
EcoRII CCWGG 2 cut(s) 475, 533
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 176, 577
FaiI YATR 9 cut(s) 148, 174, 281, 288, 298, 483, 507, 575, 607
FaqI GGGAC 1 cut(s) 437
FatI CATG 2 cut(s) 172, 573
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 2 cut(s) 200, 362
FspI TGCGCA 1 cut(s) 349
GlaI GCGC 3 cut(s) 349, 463, 543
GluI GCNGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 1 cut(s) 519
HapII CCGG 1 cut(s) 455
HhaI GCGC 3 cut(s) 350, 464, 544
Hin1II CATG 2 cut(s) 176, 577
Hin6I GCGC 3 cut(s) 348, 462, 542
HinP1I GCGC 3 cut(s) 348, 462, 542
HinfI GANTC 2 cut(s) 113, 314
HpaII CCGG 1 cut(s) 455
Hpy166II GTNNAC 1 cut(s) 584
Hpy188I TCNGA 2 cut(s) 49, 319
Hpy188III TCNNGA 3 cut(s) 302, 323, 341
Hpy8I GTNNAC 1 cut(s) 584
HpyAV CCTTC 2 cut(s) 276, 397
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 5 cut(s) 296, 485, 495, 573, 584
Hsp92II CATG 2 cut(s) 176, 577
HspAI GCGC 3 cut(s) 348, 462, 542
KpnI GGTACC 2 cut(s) 243, 617
Kzo9I GATC 4 cut(s) 24, 319, 337, 625
Lsp1109I GCAGC 1 cut(s) 29
MaeI CTAG 2 cut(s) 200, 362
MaeIII GTNAC 1 cut(s) 563
MalI GATC 4 cut(s) 26, 321, 339, 627
MboI GATC 4 cut(s) 24, 319, 337, 625
MboII GAAGA 8 cut(s) 34, 119, 134, 164, 188, 230, 236, 608
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 417, 586
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 3 cut(s) 211, 244, 326
MluNI TGGCCA 1 cut(s) 519
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 3 cut(s) 27, 99, 171
MnlI CCTC 5 cut(s) 46, 127, 214, 502, 613
Mox20I TGGCCA 1 cut(s) 519
Mph1103I ATGCAT 1 cut(s) 487
MscI TGGCCA 1 cut(s) 519
MseI TTAA 2 cut(s) 167, 333
Msp20I TGGCCA 1 cut(s) 519
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 3 cut(s) 455, 477, 535
Mva1269I GAATGC 1 cut(s) 98
MvaI CCWGG 2 cut(s) 477, 535
NciI CCSGG 1 cut(s) 455
NdeII GATC 4 cut(s) 24, 319, 337, 625
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 176, 577
NlaIV GGNNCC 2 cut(s) 241, 615
NmuCI GTSAC 1 cut(s) 563
NsbI TGCGCA 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 577
PasI CCCWGGG 1 cut(s) 534
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 1 cut(s) 19
Ple19I CGATCG 1 cut(s) 628
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 475, 533
PspGI CCWGG 2 cut(s) 475, 533
PspN4I GGNNCC 2 cut(s) 241, 615
PspPI GGNCC 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 534
PsuI RGATCY 1 cut(s) 337
PvuI CGATCG 1 cut(s) 628
RsaI GTAC 3 cut(s) 241, 437, 615
RsaNI GTAC 3 cut(s) 240, 436, 614
SaqAI TTAA 2 cut(s) 167, 333
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 4 cut(s) 24, 319, 337, 625
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 455, 477, 535
SduI GDGCHC 2 cut(s) 417, 586
SinI GGWCC 1 cut(s) 473
Sse9I AATT 3 cut(s) 211, 244, 326
SspMI CTAG 2 cut(s) 200, 362
StyD4I CCNGG 3 cut(s) 453, 475, 533
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 3 cut(s) 27, 322, 357
TasI AATT 3 cut(s) 211, 244, 326
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 167, 333
Tru9I TTAA 2 cut(s) 167, 333
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 4 cut(s) 141, 189, 303, 384
TspRI CASTG 1 cut(s) 316
VneI GTGCAC 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 2 cut(s) 211, 326
XceI RCATGY 1 cut(s) 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XspI CTAG 2 cut(s) 200, 362
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.