Rmu_sc0002298.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002298.1
OG0000181
Physical Location & Seq
Reverse (-)
23321 .. 25643
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002298.1_g000007.1.cds

Sequence Viewer

Length: 771 bp
atgggctctaagttgtgggccagtaagcagggagccttgccaccttcatttattagtagtgatggtgggccttcgtgggcttttaggttggtatatggttttcaaatgtttatctatcaggatgacaggatcaaggcttctattgaagttgttttactctgtcatccagacccagacgacgccatgtctcttgtcgaatcagaattcttcaaggatccgaacccgtacctgaaccaggtcccgccggaggaggacgacaagatccaggctcatggaaaacacaaggctgctgaagactctctgtctcaacttgaagtagaggaagaagaggaagaagatgaagaaggagaagaagaagcagaagaagaagaagaagaagcagaagaagaagaagaaggagaagaatttgagttgtgtgatgtttgtttgaaggacaaggaacactggacggatgaatgcccgtacttggtttgtatcccaaacccaatggaagtaactcttggcaaaggttattatatggtttgtgtggactgtaatgtgtcgggtggccactctgatatagtcggtacacaatgtaatgtgtggggtggccaccctgataggaggtggaaaggacgtgctattgtcaaggtctgcggtatttgtgcgggcgtacgccactggtctgcagagtgcccaaataagcacttactacaaaagcaaaagagtctgttggagtgtgctgctgaatatcggtcttggttggctaccaaaaaatgtcaacctgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.92

Weight (kDa)

4.47

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 242, 636, 647
AclWI GGATC 4 cut(s) 137, 209, 222, 256
AcoI YGGCCR 2 cut(s) 547, 589
AcsI RAATTY 2 cut(s) 203, 404
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 4 cut(s) 227, 464, 568, 654
AfiI CCNNNNNNNGG 3 cut(s) 235, 247, 466
AgsI TTSAA 5 cut(s) 104, 146, 211, 314, 430
AhdI GACNNNNNGTC 2 cut(s) 184, 301
AjiI CACGTC 1 cut(s) 617
AjnI CCWGG 2 cut(s) 234, 264
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
Alw26I GTCTC 2 cut(s) 192, 309
AlwI GGATC 4 cut(s) 137, 209, 222, 256
AoxI GGCC 4 cut(s) 18, 68, 547, 589
ApeKI GCWGC 2 cut(s) 287, 722
ApoI RAATTY 2 cut(s) 203, 404
AspS9I GGNCC 3 cut(s) 18, 68, 238
AvaII GGWCC 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 677
BalI TGGCCA 2 cut(s) 549, 591
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 274, 709
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 236, 266
BciVI GTATCC 1 cut(s) 485
BcoDI GTCTC 2 cut(s) 192, 309
BfmI CTRYAG 1 cut(s) 666
BfuI GTATCC 1 cut(s) 485
BisI GCNGC 2 cut(s) 288, 723
BlsI GCNGC 2 cut(s) 289, 724
Bme1390I CCNGG 2 cut(s) 236, 266
Bme18I GGWCC 1 cut(s) 238
BmeRI GACNNNNNGTC 2 cut(s) 184, 301
BmgBI CACGTC 1 cut(s) 617
BmgT120I GGNCC 3 cut(s) 18, 68, 238
BmiI GGNNCC 3 cut(s) 34, 216, 240
BmrFI CCNGG 2 cut(s) 236, 266
BpiI GAAGAC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 247, 466
Bse1I ACTGG 3 cut(s) 21, 449, 665
BseBI CCWGG 2 cut(s) 236, 266
BseGI GGATG 3 cut(s) 127, 163, 457
BseLI CCNNNNNNNGG 3 cut(s) 235, 247, 466
BseNI ACTGG 3 cut(s) 21, 449, 665
BseRI GAGGAG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 677
BseXI GCAGC 2 cut(s) 274, 709
BshFI GGCC 4 cut(s) 20, 70, 549, 591
BsiSI CCGG 1 cut(s) 245
BsiWI CGTACG 1 cut(s) 652
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 3 cut(s) 235, 247, 466
BsmAI GTCTC 2 cut(s) 192, 309
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 4 cut(s) 20, 70, 549, 591
Bsp1286I GDGCHC 2 cut(s) 8, 677
Bsp143I GATC 3 cut(s) 129, 214, 261
BspACI CCGC 3 cut(s) 242, 636, 647
BspANI GGCC 4 cut(s) 20, 70, 549, 591
BspLI GGNNCC 3 cut(s) 34, 216, 240
BspMAI CTGCAG 1 cut(s) 670
BspPI GGATC 4 cut(s) 137, 209, 222, 256
BsrI ACTGG 3 cut(s) 21, 449, 665
BssMI GATC 3 cut(s) 129, 214, 261
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 236, 266
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 1 cut(s) 9
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 3 cut(s) 127, 163, 457
BstKTI GATC 3 cut(s) 132, 217, 264
BstMAI GTCTC 2 cut(s) 192, 309
BstMBI GATC 3 cut(s) 129, 214, 261
BstNI CCWGG 2 cut(s) 236, 266
BstSCI CCNGG 2 cut(s) 234, 264
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 677
BstV1I GCAGC 2 cut(s) 274, 709
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 2 cut(s) 214, 261
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 2 cut(s) 214, 261
BsuI GTATCC 1 cut(s) 485
BsuRI GGCC 4 cut(s) 20, 70, 549, 591
BtrI CACGTC 1 cut(s) 617
BtsCI GGATG 3 cut(s) 127, 163, 457
BtsIMutI CAGTG 2 cut(s) 442, 658
Cac8I GCNNGC 1 cut(s) 649
Cfr13I GGNCC 3 cut(s) 18, 68, 238
CseI GACGC 1 cut(s) 188
CsiI ACCWGGT 1 cut(s) 234
Csp6I GTAC 4 cut(s) 226, 463, 567, 653
CviAII CATG 2 cut(s) 184, 272
CviQI GTAC 4 cut(s) 226, 463, 567, 653
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 131, 216, 263
DpnII GATC 3 cut(s) 129, 214, 261
DriI GACNNNNNGTC 2 cut(s) 184, 301
EaeI YGGCCR 2 cut(s) 547, 589
Eam1104I CTCTTC 1 cut(s) 321
Eam1105I GACNNNNNGTC 2 cut(s) 184, 301
EarI CTCTTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 234, 264
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 2 cut(s) 187, 275
FaiI YATR 7 cut(s) 94, 96, 185, 273, 516, 518, 560
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 183, 271
FauI CCCGC 2 cut(s) 249, 640
Fnu4HI GCNGC 2 cut(s) 288, 723
FokI GGATG 3 cut(s) 134, 150, 464
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 288, 723
GluI GCNGC 2 cut(s) 288, 723
HaeIII GGCC 4 cut(s) 20, 70, 549, 591
HapII CCGG 1 cut(s) 245
HgaI GACGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 187, 275
HincII GTYRAC 1 cut(s) 761
HindII GTYRAC 1 cut(s) 761
HinfI GANTC 3 cut(s) 197, 296, 706
HpaII CCGG 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 529, 569, 761
Hpy188I TCNGA 3 cut(s) 202, 219, 556
Hpy188III TCNNGA 2 cut(s) 119, 167
Hpy8I GTNNAC 3 cut(s) 529, 569, 761
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 5 cut(s) 54, 81, 338, 389, 424
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 1 cut(s) 668
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 616
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 187, 275
Kzo9I GATC 3 cut(s) 129, 214, 261
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 2 cut(s) 274, 709
MabI ACCWGGT 1 cut(s) 234
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 1 cut(s) 493
MalI GATC 3 cut(s) 131, 216, 263
MboI GATC 3 cut(s) 129, 214, 261
MflI RGATCY 2 cut(s) 214, 261
MhlI GDGCHC 2 cut(s) 8, 677
MlsI TGGCCA 2 cut(s) 549, 591
MluCI AATT 2 cut(s) 203, 404
MluNI TGGCCA 2 cut(s) 549, 591
MlyI GAGTC 2 cut(s) 290, 715
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 5 cut(s) 241, 244, 313, 322, 597
Mox20I TGGCCA 2 cut(s) 549, 591
MscI TGGCCA 2 cut(s) 549, 591
Msp20I TGGCCA 2 cut(s) 549, 591
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 236, 266
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 2 cut(s) 236, 266
NdeII GATC 3 cut(s) 129, 214, 261
NlaIII CATG 2 cut(s) 187, 275
NlaIV GGNNCC 3 cut(s) 34, 216, 240
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 197
Pfl23II CGTACG 1 cut(s) 652
PkrI GCNGC 2 cut(s) 289, 724
PleI GAGTC 2 cut(s) 290, 714
PpsI GAGTC 2 cut(s) 290, 714
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 234, 264
PspGI CCWGG 2 cut(s) 234, 264
PspLI CGTACG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 34, 216, 240
PspPI GGNCC 3 cut(s) 18, 68, 238
PspPPI RGGWCCY 1 cut(s) 238
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 2 cut(s) 214, 261
RsaI GTAC 4 cut(s) 227, 464, 568, 654
RsaNI GTAC 4 cut(s) 226, 463, 567, 653
SatI GCNGC 2 cut(s) 288, 723
Sau3AI GATC 3 cut(s) 129, 214, 261
Sau96I GGNCC 3 cut(s) 18, 68, 238
SchI GAGTC 2 cut(s) 290, 715
ScrFI CCNGG 2 cut(s) 236, 266
SduI GDGCHC 2 cut(s) 8, 677
SetI ASST 9 cut(s) 46, 89, 231, 240, 511, 608, 619, 633, 766
SexAI ACCWGGT 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 238
Sse9I AATT 2 cut(s) 203, 404
SsiI CCGC 3 cut(s) 242, 636, 647
StyD4I CCNGG 2 cut(s) 234, 264
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 1 cut(s) 619
TaqI TCGA 1 cut(s) 195
TaqII GACCGA 1 cut(s) 723
TasI AATT 2 cut(s) 203, 404
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 2 cut(s) 449, 665
TseI GCWGC 2 cut(s) 287, 722
TspDTI ATGAA 3 cut(s) 36, 354, 468
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 2 cut(s) 449, 665
VpaK11BI GGWCC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 2 cut(s) 203, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.