Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00367

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Forward (+)

12059 .. 13225

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

AATATCACCATGTCGTCGACGAGCGAGAGTCACTGCTATTTTAGCAGAGTGTTGCAAAGAGAGACAATTGAATACAAACCAAGTGAGGAAAAATGGCTTCCGATTAGATTTTATCTCATCAAGCAAACCCGCTACTGGAATGATAAGTCAAGCAACTATTCTTGTGAATCCTATGCAGCTGGCCAGACAGGCGCTTCAATCCATCACTCTTATTCAGACCACAGACGAGGGTACACTGCATTTATGACTCATTACCTTTCCGAAATCGGAGTCCCACGACTGGAGCACTCAACTATCCTTGATAAAATATTTCAGGTGGTTCGCTCGGCCTCCCCCCAGCGAACCATTCTTGTGTTAGTAGCCGACATCACTGTGCCTGCCATTGATACACTTGTGTGCAAGAATCCCAGTGTTTGTTTCAACTTGAAATATTGGGTTGATGGTGAATTGCATCAGGAAACACATACAATGCGGGATGTTGACTGTCATGGTTCGCTTACAGTGGAATCCTTCGGAGCTGTTCCTAGCACCGCTGGGTTTGTCCATGCAAGTACAAAGCCAATGCGGGATTACCACAAGATCGGGTCTCATGGTACCGCTGAGTTTGTTGAACTAGAC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

206

Amino Acids

23.44

Weight (kDa)

6.47

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	5 cut(s)	130, 472, 531, 565, 597
AcoI	YGGCCR	1 cut(s)	181
AfaI	GTAC	3 cut(s)	233, 553, 595
AfiI	CCNNNNNNNGG	2 cut(s)	135, 280
AgsI	TTSAA	5 cut(s)	71, 198, 421, 427, 611
AleI	CACNNNNGTG	1 cut(s)	394
AluBI	AGCT	2 cut(s)	179, 518
AluI	AGCT	2 cut(s)	179, 518
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	56, 591
AoxI	GGCC	2 cut(s)	181, 327
ApeKI	GCWGC	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp718I	GGTACC	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	455
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BalI	TGGCCA	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	2 cut(s)	210, 434
BcoDI	GTCTC	2 cut(s)	56, 591
BfaI	CTAG	2 cut(s)	525, 614
BfoI	RGCGCY	1 cut(s)	195
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	595
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 280
Bse1I	ACTGG	3 cut(s)	140, 285, 408
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	135, 280
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	3 cut(s)	140, 285, 408
BseXI	GCAGC	1 cut(s)	188
BseYI	CCCAGC	2 cut(s)	336, 533
BshFI	GGCC	2 cut(s)	183, 329
BshNI	GGYRCC	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	135, 280
BsmAI	GTCTC	2 cut(s)	56, 591
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	183, 329
Bso31I	GGTCTC	1 cut(s)	591
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	579
BspACI	CCGC	5 cut(s)	130, 472, 531, 565, 597
BspANI	GGCC	2 cut(s)	183, 329
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	591
BsrI	ACTGG	3 cut(s)	140, 285, 408
BssMI	GATC	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	373, 485, 502
BstC8I	GCNNGC	2 cut(s)	181, 378
BstDEI	CTNAG	1 cut(s)	600
BstF5I	GGATG	1 cut(s)	481
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	582
BstMAI	GTCTC	2 cut(s)	56, 591
BstMBI	GATC	1 cut(s)	579
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 189
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	183, 329
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	2 cut(s)	31, 234
BtsIMutI	CAGTG	5 cut(s)	31, 234, 369, 415, 507
Cac8I	GCNNGC	2 cut(s)	181, 378
CfoI	GCGC	1 cut(s)	194
Csp6I	GTAC	3 cut(s)	232, 552, 594
CviAII	CATG	4 cut(s)	10, 488, 545, 590
CviJI	RGCY	7 cut(s)	97, 179, 183, 329, 362, 518, 559
CviKI_1	RGCY	7 cut(s)	97, 179, 183, 329, 362, 518, 559
CviQI	GTAC	3 cut(s)	232, 552, 594
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	591
FaeI	CATG	4 cut(s)	13, 491, 548, 593
FaiI	YATR	7 cut(s)	11, 174, 245, 465, 489, 546, 591
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	4 cut(s)	9, 487, 544, 589
FauI	CCCGC	3 cut(s)	137, 465, 558
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	525, 614
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	177
GsaI	CCCAGC	2 cut(s)	340, 537
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	183, 329
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	13, 491, 548, 593
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	2 cut(s)	18, 481
HindII	GTYRAC	2 cut(s)	18, 481
HinfI	GANTC	6 cut(s)	28, 167, 247, 270, 403, 506
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	18, 234, 481
Hpy188I	TCNGA	5 cut(s)	102, 217, 262, 269, 515
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	3 cut(s)	18, 234, 481
Hpy99I	CGWCG	2 cut(s)	19, 22
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	3 cut(s)	373, 485, 502
HpyCH4V	TGCA	6 cut(s)	55, 176, 239, 399, 451, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 189
HpyF3I	CTNAG	1 cut(s)	600
Hsp92II	CATG	4 cut(s)	13, 491, 548, 593
HspAI	GCGC	1 cut(s)	192
KpnI	GGTACC	1 cut(s)	597
Kzo9I	GATC	1 cut(s)	579
LmnI	GCTCC	2 cut(s)	283, 515
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	2 cut(s)	525, 614
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	581
MboI	GATC	1 cut(s)	579
MfeI	CAATTG	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	2 cut(s)	66, 446
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	3 cut(s)	37, 241, 279
MnlI	CCTC	3 cut(s)	79, 221, 340
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MslI	CAYNNNNRTG	3 cut(s)	350, 371, 394
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	3 cut(s)	179, 533, 599
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	42, 189
NdeII	GATC	1 cut(s)	579
NlaIII	CATG	4 cut(s)	13, 491, 548, 593
NlaIV	GGNNCC	1 cut(s)	595
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	29
OliI	CACNNNNGTG	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	167, 403, 506
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	3 cut(s)	36, 241, 278
PpsI	GAGTC	3 cut(s)	36, 241, 278
PspFI	CCCAGC	2 cut(s)	336, 533
PspN4I	GGNNCC	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	233, 553, 595
RsaNI	GTAC	3 cut(s)	232, 552, 594
RseI	CAYNNNNRTG	3 cut(s)	350, 371, 394
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	579
SchI	GAGTC	3 cut(s)	37, 241, 279
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	4 cut(s)	181, 258, 318, 520
SfaNI	GCATC	1 cut(s)	460
SgrDI	CGTCGACG	1 cut(s)	16
SmiMI	CAYNNNNRTG	3 cut(s)	350, 371, 394
Sse9I	AATT	2 cut(s)	66, 446
SsiI	CCGC	5 cut(s)	130, 472, 531, 565, 597
SspI	AATATT	2 cut(s)	309, 431
SspMI	CTAG	2 cut(s)	525, 614
TaaI	ACNGT	3 cut(s)	373, 485, 502
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	66, 446
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	3 cut(s)	167, 403, 506
TscAI	CASTG	5 cut(s)	38, 241, 376, 415, 507
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	29
TspRI	CASTG	5 cut(s)	38, 241, 376, 415, 507
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	2 cut(s)	525, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.