Rroxscaffold_1G00061730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000181
Physical Location & Seq
Reverse (-)
83791798 .. 83798065
6268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061730.1

Sequence Viewer

Length: 1050 bp
ATGGCCGCCGTGCATGTCGATCCAGCCGATTCAACCAACCGCGACAATTCTCATGGTAGCAAGGGGGGCAAGGCCAAAAGACTCAAGTGGTTGGACATTGCTATGGAGGATCCCTCTGCGGCTTCTGAAGGCTCCAGTTCTTCTGCCATGGCCGCCGTGCATATTTATCCAGCCGATTCAATCAACTGCGACAATTCTCATGGTATGCCAAAGGAAGCCATGGCCGCCGTGCATATTGATCCAGCCGATTCAATCAACCGCGACAATTCTCATGGTATGCCAAAGGAAGCCATGGCCGCCGTGCATATTTATCCAGCCGATTCAATCAACCGCGACAATTCTCATGGTATGCCAAAGGAAGCCATGGCTGCCGTGCATATCAACCGCGACAATTCTCATGGTAGCAAGGGTGGCAAGGCCAGAAGACTCAAGGGGTCGAACATTGCTATGGAAGGTCCCTGGGTGGCTTATAAAGGGCCCGTTTCTTCTGGTAGCAAGGGTGGCAAGGCCAAAAGACTCAAGCTGAAACTCCTTGCTGTTGAGACTTATGATGGCCCCAGTTCTCTTGGCATGAAGGCAGAAGAACCAAATATTGGCACTTCTCCACTCCACAAGCTCCATAGTCATACTGGTGATGCAGAAGGACCAATGAGCACATTCTCAAAAAAAAAGAAAAAAGGACAAATAAGCACTTTCTTTGCGTCAGCCGCCCGTCGTAGGTCAATGTTCCGGATTAAGCCAGAATTCCGTCGTGGTAAGTGTTTGGTTTGTTCCTTGGTAGATGACCACCCTACATCTGTATGCCCGTACAAGTCTTTTCTCCCAGAGGATGCAATCGTTAGCAGTGTGTGTGTCTTGCTTTGTAATTTATGTGGCAAGTCAGATGGACGTTGCGAATGTTATAAAGTGGAAGGACGGACTCTTGTTTTCAAGTTTTGTCATCTATGTTGCAGGTCATACCACTGGAGTACAGAGTGCCCATGCAGGGTTGCACTTAGTTCTCCTCCAGTGGACTCTCCTCATCAAACCTCTAGTGCAGAGCTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

37.6

Weight (kDa)

8.95

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 471, 903
Acc36I ACCTGC 1 cut(s) 942
AccB7I CCANNNNNTGG 1 cut(s) 593
AccII CGCG 4 cut(s) 42, 261, 333, 387
AccIII TCCGGA 1 cut(s) 729
AclWI GGATC 4 cut(s) 14, 104, 117, 233
AcoI YGGCCR 4 cut(s) 3, 150, 222, 294
AcsI RAATTY 1 cut(s) 743
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 2 cut(s) 809, 970
AfiI CCNNNNNNNGG 3 cut(s) 593, 717, 985
AgsI TTSAA 5 cut(s) 33, 180, 252, 324, 931
AjnI CCWGG 1 cut(s) 458
AjuI GAANNNNNNNTTGG 2 cut(s) 576, 608
AluBI AGCT 3 cut(s) 523, 616, 1042
AluI AGCT 3 cut(s) 523, 616, 1042
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 4 cut(s) 14, 104, 117, 233
Aor13HI TCCGGA 1 cut(s) 729
AoxI GGCC 9 cut(s) 3, 72, 150, 222, 294, 417, 476, 507, 553
ApaI GGGCCC 1 cut(s) 480
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 743
AspS9I GGNCC 5 cut(s) 455, 476, 477, 554, 644
AsuHPI GGTGA 1 cut(s) 644
AvaII GGWCC 2 cut(s) 455, 644
BaeGI GKGCMC 2 cut(s) 480, 980
BamHI GGATCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 545, 878
BceAI ACGGC 4 cut(s) 140, 212, 284, 356
BciT130I CCWGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 1 cut(s) 1032
BfuAI ACCTGC 1 cut(s) 942
BisI GCNGC 7 cut(s) 6, 120, 153, 225, 297, 369, 708
BlsI GCNGC 7 cut(s) 7, 121, 154, 226, 298, 370, 709
Bme1390I CCNGG 1 cut(s) 460
Bme18I GGWCC 2 cut(s) 455, 644
BmgT120I GGNCC 5 cut(s) 455, 476, 477, 554, 644
BmiI GGNNCC 5 cut(s) 111, 133, 457, 478, 556
BmrFI CCNGG 1 cut(s) 460
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 625, 820
BmuI ACTGGG 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 430
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 3 cut(s) 118, 985, 990
BpuEI CTTGAG 3 cut(s) 68, 413, 503
BsaJI CCNNGG 7 cut(s) 147, 219, 291, 363, 458, 459, 774
BsaWI WCCGGW 1 cut(s) 729
Bsc4I CCNNNNNNNGG 3 cut(s) 593, 717, 985
Bse1I ACTGG 5 cut(s) 135, 558, 634, 968, 1007
Bse3DI GCAATG 2 cut(s) 96, 441
BseAI TCCGGA 1 cut(s) 729
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 7 cut(s) 147, 219, 291, 363, 458, 459, 774
BseGI GGATG 1 cut(s) 835
BseLI CCNNNNNNNGG 3 cut(s) 593, 717, 985
BseMI GCAATG 2 cut(s) 96, 441
BseNI ACTGG 5 cut(s) 135, 558, 634, 968, 1007
BseRI GAGGAG 2 cut(s) 993, 1008
BseSI GKGCMC 2 cut(s) 480, 980
BseXI GCAGC 1 cut(s) 355
Bsh1236I CGCG 4 cut(s) 42, 261, 333, 387
BshFI GGCC 9 cut(s) 5, 74, 152, 224, 296, 419, 478, 509, 555
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 1 cut(s) 730
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 3 cut(s) 593, 717, 985
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 9 cut(s) 5, 74, 152, 224, 296, 419, 478, 509, 555
Bsp120I GGGCCC 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 480, 656, 980
Bsp13I TCCGGA 1 cut(s) 729
Bsp143I GATC 3 cut(s) 19, 109, 238
Bsp19I CCATGG 4 cut(s) 147, 219, 291, 363
BspANI GGCC 9 cut(s) 5, 74, 152, 224, 296, 419, 478, 509, 555
BspEI TCCGGA 1 cut(s) 729
BspFNI CGCG 4 cut(s) 42, 261, 333, 387
BspLI GGNNCC 5 cut(s) 111, 133, 457, 478, 556
BspMI ACCTGC 1 cut(s) 942
BspPI GGATC 4 cut(s) 14, 104, 117, 233
BsrDI GCAATG 2 cut(s) 96, 441
BsrI ACTGG 5 cut(s) 135, 558, 634, 968, 1007
BssECI CCNNGG 7 cut(s) 147, 219, 291, 363, 458, 459, 774
BssMI GATC 3 cut(s) 19, 109, 238
BssT1I CCWWGG 5 cut(s) 147, 219, 291, 363, 774
Bst2UI CCWGG 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 995
BstDSI CCRYGG 4 cut(s) 147, 219, 291, 363
BstF5I GGATG 1 cut(s) 835
BstFNI CGCG 4 cut(s) 42, 261, 333, 387
BstKTI GATC 3 cut(s) 22, 112, 241
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 19, 109, 238
BstMWI GCNNNNNNNGC 8 cut(s) 66, 152, 224, 296, 368, 411, 501, 707
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 458
BstSLI GKGCMC 2 cut(s) 480, 980
BstUI CGCG 4 cut(s) 42, 261, 333, 387
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 9 cut(s) 5, 74, 152, 224, 296, 419, 478, 509, 555
BtgI CCRYGG 4 cut(s) 147, 219, 291, 363
BtsCI GGATG 1 cut(s) 835
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 3 cut(s) 850, 961, 1014
BveI ACCTGC 1 cut(s) 942
Cfr13I GGNCC 5 cut(s) 455, 476, 477, 554, 644
CseI GACGC 1 cut(s) 690
Csp6I GTAC 2 cut(s) 808, 969
CviQI GTAC 2 cut(s) 808, 969
DdeI CTNAG 1 cut(s) 995
DpnI GATC 3 cut(s) 21, 111, 240
DpnII GATC 3 cut(s) 19, 109, 238
EaeI YGGCCR 4 cut(s) 3, 150, 222, 294
Eco130I CCWWGG 5 cut(s) 147, 219, 291, 363, 774
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 455, 644
Eco57I CTGAAG 1 cut(s) 147
EcoO109I RGGNCCY 2 cut(s) 455, 476
EcoRI GAATTC 1 cut(s) 743
EcoRII CCWGG 1 cut(s) 458
EcoT14I CCWWGG 5 cut(s) 147, 219, 291, 363, 774
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 5 cut(s) 147, 219, 291, 363, 774
FaqI GGGAC 1 cut(s) 441
Fnu4HI GCNGC 7 cut(s) 6, 120, 153, 225, 297, 369, 708
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 7 cut(s) 6, 120, 153, 225, 297, 369, 708
FspBI CTAG 1 cut(s) 1032
GluI GCNGC 7 cut(s) 6, 120, 153, 225, 297, 369, 708
GsuI CTGGAG 3 cut(s) 118, 985, 990
HaeIII GGCC 9 cut(s) 5, 74, 152, 224, 296, 419, 478, 509, 555
HapII CCGG 1 cut(s) 730
HgaI GACGC 1 cut(s) 690
HinfI GANTC 9 cut(s) 29, 81, 176, 248, 320, 426, 516, 919, 1013
HpaII CCGG 1 cut(s) 730
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 1 cut(s) 1012
Hpy188I TCNGA 2 cut(s) 127, 883
Hpy188III TCNNGA 1 cut(s) 730
Hpy8I GTNNAC 1 cut(s) 1012
Hpy99I CGWCG 2 cut(s) 717, 753
HpyAV CCTTC 5 cut(s) 122, 446, 568, 635, 905
HpyCH4IV ACGT 1 cut(s) 889
HpyF10VI GCNNNNNNNGC 8 cut(s) 66, 152, 224, 296, 368, 411, 501, 707
HpyF3I CTNAG 1 cut(s) 995
HpySE526I ACGT 1 cut(s) 889
Kpn2I TCCGGA 1 cut(s) 729
Kzo9I GATC 3 cut(s) 19, 109, 238
LmnI GCTCC 2 cut(s) 137, 621
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 625, 820
MaeI CTAG 1 cut(s) 1032
MaeII ACGT 1 cut(s) 889
MalI GATC 3 cut(s) 21, 111, 240
MboI GATC 3 cut(s) 19, 109, 238
MboII GAAGA 4 cut(s) 132, 435, 477, 593
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 3 cut(s) 480, 656, 980
MluCI AATT 7 cut(s) 46, 193, 265, 337, 391, 743, 865
MlyI GAGTC 5 cut(s) 75, 420, 510, 913, 1007
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 100, 124, 820, 1014, 1029, 1039
MroI TCCGGA 1 cut(s) 729
MseI TTAA 2 cut(s) 735, 1048
MslI CAYNNNNRTG 4 cut(s) 101, 446, 630, 799
MspI CCGG 1 cut(s) 730
MspR9I CCNGG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 460
MvnI CGCG 4 cut(s) 42, 261, 333, 387
MwoI GCNNNNNNNGC 8 cut(s) 66, 152, 224, 296, 368, 411, 501, 707
NcoI CCATGG 4 cut(s) 147, 219, 291, 363
NdeII GATC 3 cut(s) 19, 109, 238
NlaIV GGNNCC 5 cut(s) 111, 133, 457, 478, 556
NspI RCATGY 1 cut(s) 17
PasI CCCWGGG 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 4 cut(s) 29, 176, 248, 320
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 7 cut(s) 7, 121, 154, 226, 298, 370, 709
PleI GAGTC 5 cut(s) 75, 420, 510, 913, 1007
PpsI GAGTC 5 cut(s) 75, 420, 510, 913, 1007
PpuMI RGGWCCY 1 cut(s) 455
PsiI TTATAA 2 cut(s) 471, 903
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 5 cut(s) 111, 133, 457, 478, 556
PspOMI GGGCCC 1 cut(s) 476
PspPI GGNCC 5 cut(s) 455, 476, 477, 554, 644
PspPPI RGGWCCY 1 cut(s) 455
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 2 cut(s) 809, 970
RsaNI GTAC 2 cut(s) 808, 969
RseI CAYNNNNRTG 4 cut(s) 101, 446, 630, 799
SaqAI TTAA 2 cut(s) 735, 1048
SatI GCNGC 7 cut(s) 6, 120, 153, 225, 297, 369, 708
Sau3AI GATC 3 cut(s) 19, 109, 238
Sau96I GGNCC 5 cut(s) 455, 476, 477, 554, 644
SchI GAGTC 5 cut(s) 75, 420, 510, 913, 1007
ScrFI CCNGG 1 cut(s) 460
SduI GDGCHC 3 cut(s) 480, 656, 980
SetI ASST 8 cut(s) 457, 525, 618, 722, 892, 956, 1031, 1044
SfaNI GCATC 2 cut(s) 625, 820
SinI GGWCC 2 cut(s) 455, 644
SmiMI CAYNNNNRTG 4 cut(s) 101, 446, 630, 799
SmlI CTYRAG 3 cut(s) 83, 428, 518
SmoI CTYRAG 3 cut(s) 83, 428, 518
Sse9I AATT 7 cut(s) 46, 193, 265, 337, 391, 743, 865
SspI AATATT 1 cut(s) 592
SspMI CTAG 1 cut(s) 1032
StyD4I CCNGG 1 cut(s) 458
StyI CCWWGG 5 cut(s) 147, 219, 291, 363, 774
TaiI ACGT 1 cut(s) 892
TaqI TCGA 2 cut(s) 18, 437
TasI AATT 7 cut(s) 46, 193, 265, 337, 391, 743, 865
TatI WGTACW 1 cut(s) 968
TauI GCSGC 6 cut(s) 8, 122, 155, 227, 299, 710
TfiI GAWTC 4 cut(s) 29, 176, 248, 320
Tru1I TTAA 2 cut(s) 735, 1048
Tru9I TTAA 2 cut(s) 735, 1048
TscAI CASTG 3 cut(s) 850, 968, 1014
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 587
TspGWI ACGGA 2 cut(s) 737, 931
TspRI CASTG 3 cut(s) 850, 968, 1014
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 455, 644
XapI RAATTY 1 cut(s) 743
XceI RCATGY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XspI CTAG 1 cut(s) 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.