Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Forward (+)

2545935 .. 2550353

Gene Structure 4419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG028300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCCTTGACGAGCGAGAGTCACTGTTATTTTAGCAGAGTGTTGCAAAGAGAAACAATTGAATACAAACCAAGTGAGGGAAAATGGCTTCCGATTAGATTTTATCTCATCAAGCAAACCCGCTGCTGGAATGATAAGTCAAGCAACTGTACTTGCGAATCCTCTGCAGCTGCCCATACAGGCGCTTCAATCCTTTACTCTTATCCAGACCACAGACGAGGGTACACAGCAGCTATGACTTTTTACCTTTCCGAAATTGGTGTCCCACGACTGGAGCACTCAACTATCATTGATAAAATATTTCAGGTGGTTCGCTCGGCCTCCCCCCAGCGAACCATTCTTGTGTTAGTAGCTGACATCACTGTGCCTGCCATTGATACACTTGTGAGAAAGAATCCCAGTGTTTATTTCAACTTGAAATATTCGGTTGATGGTGAATTGCATCATGAAACGCATACAATGCGGGATGTTGACTATCATGGTTCACTTACAGTGGAATCCTTTGGAGCTGTTCCTAAGACCGCTGGGTTTGTCCATGCAAGTACAAAGCCAATGCGGGATTGCCACCAGATCGGGTCTCATGGTAGGCATTTATATATTTTTTTAGGGTTTATATATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

207

Amino Acids

23.52

Weight (kDa)

8.56

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	121, 463, 522, 556
AfaI	GTAC	3 cut(s)	151, 224, 544
AfiI	CCNNNNNNNGG	3 cut(s)	77, 126, 271
AgsI	TTSAA	4 cut(s)	62, 189, 412, 418
AluBI	AGCT	4 cut(s)	170, 233, 353, 509
AluI	AGCT	4 cut(s)	170, 233, 353, 509
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	582
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	4 cut(s)	123, 167, 170, 230
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	446
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	110, 157, 179, 242
BccI	CCATC	1 cut(s)	425
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcoDI	GTCTC	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	186
BisI	GCNGC	4 cut(s)	124, 168, 171, 231
BlsI	GCNGC	4 cut(s)	125, 169, 172, 232
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	451
BmuI	ACTGGG	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 126, 271
Bse1I	ACTGG	2 cut(s)	276, 399
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	3 cut(s)	77, 126, 271
BseNI	ACTGG	2 cut(s)	276, 399
BseXI	GCAGC	4 cut(s)	110, 157, 179, 242
BseYI	CCCAGC	2 cut(s)	327, 524
BshFI	GGCC	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	77, 126, 271
BsmAI	GTCTC	1 cut(s)	582
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	570
BspACI	CCGC	4 cut(s)	121, 463, 522, 556
BspANI	GGCC	1 cut(s)	320
BspHI	TCATGA	1 cut(s)	445
BspMAI	CTGCAG	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	276, 399
BssMI	GATC	1 cut(s)	570
Bst4CI	ACNGT	4 cut(s)	26, 149, 364, 493
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	516
BstF5I	GGATG	1 cut(s)	472
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	573
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	1 cut(s)	570
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	110, 157, 179, 242
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	4 cut(s)	22, 360, 406, 498
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	150, 223, 543
CviAII	CATG	4 cut(s)	446, 479, 536, 581
CviJI	RGCY	7 cut(s)	88, 170, 233, 320, 353, 509, 550
CviKI_1	RGCY	7 cut(s)	88, 170, 233, 320, 353, 509, 550
CviQI	GTAC	3 cut(s)	150, 223, 543
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	582
FaeI	CATG	4 cut(s)	449, 482, 539, 584
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	4 cut(s)	445, 478, 535, 580
FauI	CCCGC	3 cut(s)	128, 456, 549
Fnu4HI	GCNGC	4 cut(s)	124, 168, 171, 231
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	4 cut(s)	124, 168, 171, 231
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	4 cut(s)	124, 168, 171, 231
GsaI	CCCAGC	2 cut(s)	331, 528
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	4 cut(s)	449, 482, 539, 584
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	4 cut(s)	19, 158, 394, 497
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	225, 472, 485
Hpy188I	TCNGA	2 cut(s)	93, 253
Hpy188III	TCNNGA	2 cut(s)	206, 446
Hpy8I	GTNNAC	3 cut(s)	225, 472, 485
HpyCH4III	ACNGT	4 cut(s)	26, 149, 364, 493
HpyCH4V	TGCA	4 cut(s)	46, 167, 442, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	1 cut(s)	516
Hsp92II	CATG	4 cut(s)	449, 482, 539, 584
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	570
LmnI	GCTCC	2 cut(s)	274, 506
Lsp1109I	GCAGC	4 cut(s)	110, 157, 179, 242
LweI	GCATC	1 cut(s)	451
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	572
MboI	GATC	1 cut(s)	570
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	3 cut(s)	57, 255, 437
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	4 cut(s)	70, 172, 212, 331
MslI	CAYNNNNRTG	2 cut(s)	341, 362
MspA1I	CMGCKG	3 cut(s)	123, 170, 524
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	4 cut(s)	449, 482, 539, 584
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	445
PfeI	GAWTC	3 cut(s)	158, 394, 497
PkrI	GCNGC	4 cut(s)	125, 169, 172, 232
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PspFI	CCCAGC	2 cut(s)	327, 524
PstI	CTGCAG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	151, 224, 544
RsaNI	GTAC	3 cut(s)	150, 223, 543
RseI	CAYNNNNRTG	2 cut(s)	341, 362
SatI	GCNGC	4 cut(s)	124, 168, 171, 231
Sau3AI	GATC	1 cut(s)	570
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	6 cut(s)	172, 235, 249, 309, 355, 511
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	2 cut(s)	341, 362
Sse9I	AATT	3 cut(s)	57, 255, 437
SsiI	CCGC	4 cut(s)	121, 463, 522, 556
SspI	AATATT	2 cut(s)	300, 422
TaaI	ACNGT	4 cut(s)	26, 149, 364, 493
TasI	AATT	3 cut(s)	57, 255, 437
TatI	WGTACW	2 cut(s)	149, 542
TfiI	GAWTC	3 cut(s)	158, 394, 497
TscAI	CASTG	4 cut(s)	29, 367, 406, 498
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	123, 167, 170, 230
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	4 cut(s)	29, 367, 406, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.