RLG00000021919

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000181
Physical Location & Seq
Forward (+)
79302960 .. 79305117
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021919

Sequence Viewer

Length: 498 bp
ATGTCTCTCGAAATACCAGTTATCTCCGATGAGGATCCGAGCCGCTTCCCACGGGCGAGGAATCCCCGAAAGGGAGAGATCGATGTGGATGACCAGTTCCAGATTCTGCGTGTCTCTGATTTAAAACCAAGGGATGCTGTTCCAGACTCGGGATTTTTTCAAGAGGTAGGGAAGTGTGGAGGTCCAACTAAACTAGCTAAGGAGGAGCTCGAGAAAGCGATTGCGTTAAGTCATGAAGCGCTTCTGAAGAAATTCATGGAAGAAAATGAGACTGATGATGAGGACTCAGATGGATCAGAAGAAGAAATTGAACATTGTGAATTTGGTGACAAGGTTGTAGCCAACACTCCATCAGTAAAGACCTTGTCCGCTGTGATTCAGACTTTCGAAACGTTAACCGGAATGCAGCTGGTTTATTACCCCAAATTGGATTGTTTCCAACAATTGCTGGTGAATGGTGATGAAGATGAACAAGGACCAAAATGGGATACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.55

Weight (kDa)

4.35

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 43, 369
AclI AACGTT 1 cut(s) 392
AclWI GGATC 3 cut(s) 29, 42, 301
AcsI RAATTY 2 cut(s) 251, 320
AcuI CTGAAG 1 cut(s) 266
AfeI AGCGCT 1 cut(s) 240
AfiI CCNNNNNNNGG 3 cut(s) 71, 149, 427
AgsI TTSAA 2 cut(s) 161, 311
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 3 cut(s) 197, 208, 409
AluI AGCT 3 cut(s) 197, 208, 409
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 3 cut(s) 9, 118, 263
AlwI GGATC 3 cut(s) 29, 42, 301
AlwNI CAGNNNCTG 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 148, 209
Aor51HI AGCGCT 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 406
ApoI RAATTY 2 cut(s) 251, 320
Asp700I GAANNNNTTC 2 cut(s) 240, 251
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 182, 476
AsuHPI GGTGA 3 cut(s) 338, 463, 470
AsuII TTCGAA 1 cut(s) 387
AvaI CYCGRG 2 cut(s) 148, 209
AvaII GGWCC 2 cut(s) 182, 476
BamHI GGATCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 418
BccI CCATC 2 cut(s) 284, 358
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 3 cut(s) 9, 118, 263
BfaI CTAG 1 cut(s) 194
BfoI RGCGCY 1 cut(s) 242
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 2 cut(s) 43, 407
BlsI GCNGC 2 cut(s) 44, 408
Bme18I GGWCC 2 cut(s) 182, 476
BmeT110I CYCGRG 2 cut(s) 148, 209
BmgT120I GGNCC 2 cut(s) 182, 476
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 387
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 50, 128
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 149, 427
Bse1I ACTGG 2 cut(s) 17, 94
Bse8I GATNNNNATC 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 50, 128
BseGI GGATG 2 cut(s) 94, 139
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 3 cut(s) 71, 149, 427
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 2 cut(s) 17, 94
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 2 cut(s) 148, 209
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 3 cut(s) 71, 149, 427
BsmAI GTCTC 3 cut(s) 9, 118, 263
BsmI GAATGC 1 cut(s) 408
BsoBI CYCGRG 2 cut(s) 148, 209
Bsp119I TTCGAA 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 34, 78, 293
BspACI CCGC 2 cut(s) 43, 369
BspCNI CTCAG 1 cut(s) 299
BspDI ATCGAT 1 cut(s) 81
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 3 cut(s) 29, 42, 301
BspT104I TTCGAA 1 cut(s) 387
BsrI ACTGG 2 cut(s) 17, 94
BssECI CCNNGG 2 cut(s) 50, 128
BssMI GATC 3 cut(s) 34, 78, 293
BssT1I CCWWGG 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 387
BstDEI CTNAG 2 cut(s) 198, 286
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 94, 139
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 3 cut(s) 37, 81, 296
BstMAI GTCTC 3 cut(s) 9, 118, 263
BstMBI GATC 3 cut(s) 34, 78, 293
BstV1I GCAGC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 81
BsuI GTATCC 1 cut(s) 481
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 94, 139
CaiI CAGNNNCTG 1 cut(s) 106
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 182, 476
ClaI ATCGAT 1 cut(s) 81
CviAII CATG 2 cut(s) 233, 256
CviJI RGCY 5 cut(s) 42, 197, 208, 341, 409
CviKI_1 RGCY 5 cut(s) 42, 197, 208, 341, 409
DdeI CTNAG 2 cut(s) 198, 286
DpnI GATC 3 cut(s) 36, 80, 295
DpnII GATC 3 cut(s) 34, 78, 293
DraI TTTAAA 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 182, 476
Eco47III AGCGCT 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 2 cut(s) 148, 209
EcoICRI GAGCTC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 2 cut(s) 236, 259
FaiI YATR 2 cut(s) 234, 257
FatI CATG 2 cut(s) 232, 255
Fnu4HI GCNGC 2 cut(s) 43, 407
FokI GGATG 2 cut(s) 101, 146
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 43, 407
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 240
GluI GCNGC 2 cut(s) 43, 407
HaeII RGCGCY 1 cut(s) 242
HapII CCGG 1 cut(s) 399
HhaI GCGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 236, 259
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 5 cut(s) 61, 103, 146, 284, 376
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 1 cut(s) 399
HphI GGTGA 3 cut(s) 338, 463, 470
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 7 cut(s) 28, 39, 118, 246, 289, 298, 381
Hpy188III TCNNGA 7 cut(s) 8, 100, 143, 150, 161, 211, 233
Hpy8I GTNNAC 1 cut(s) 396
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 1 cut(s) 406
HpyF3I CTNAG 2 cut(s) 198, 286
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 2 cut(s) 236, 259
HspAI GCGC 1 cut(s) 239
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 3 cut(s) 34, 78, 293
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 30, 107, 113, 156, 395, 412, 434
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 326
MalI GATC 3 cut(s) 36, 80, 295
MboI GATC 3 cut(s) 34, 78, 293
MboII GAAGA 5 cut(s) 259, 272, 311, 314, 476
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 6 cut(s) 251, 306, 320, 425, 443, 493
MlyI GAGTC 2 cut(s) 140, 278
MmeI TCCRAC 2 cut(s) 209, 463
MnlI CCTC 6 cut(s) 25, 51, 157, 173, 196, 274
MroXI GAANNNNTTC 2 cut(s) 240, 251
MseI TTAA 3 cut(s) 122, 227, 395
MspA1I CMGCKG 2 cut(s) 371, 409
MspI CCGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 408
NdeII GATC 3 cut(s) 34, 78, 293
NlaIII CATG 2 cut(s) 236, 259
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 326
NspV TTCGAA 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 209
PagI TCATGA 1 cut(s) 232
PctI GAATGC 1 cut(s) 408
PdmI GAANNNNTTC 2 cut(s) 240, 251
PfeI GAWTC 3 cut(s) 61, 103, 376
PflFI GACNNNGTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 44, 408
PleI GAGTC 2 cut(s) 140, 278
PpsI GAGTC 2 cut(s) 140, 278
Psp124BI GAGCTC 1 cut(s) 210
Psp1406I AACGTT 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 182, 476
PstNI CAGNNNCTG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 409
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 3 cut(s) 122, 227, 395
SatI GCNGC 2 cut(s) 43, 407
Sau3AI GATC 3 cut(s) 34, 78, 293
Sau96I GGNCC 2 cut(s) 182, 476
SchI GAGTC 2 cut(s) 140, 278
SduI GDGCHC 1 cut(s) 210
SetI ASST 8 cut(s) 168, 184, 199, 210, 336, 365, 395, 411
SfaNI GCATC 1 cut(s) 124
Sfr274I CTCGAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 387
SinI GGWCC 2 cut(s) 182, 476
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 6 cut(s) 251, 306, 320, 425, 443, 493
SsiI CCGC 2 cut(s) 43, 369
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 1 cut(s) 128
TaiI ACGT 1 cut(s) 395
TaqI TCGA 4 cut(s) 9, 81, 210, 387
TasI AATT 6 cut(s) 251, 306, 320, 425, 443, 493
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 3 cut(s) 61, 103, 376
Tru1I TTAA 3 cut(s) 122, 227, 395
Tru9I TTAA 3 cut(s) 122, 227, 395
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 4 cut(s) 244, 249, 477, 483
Tth111I GACNNNGTC 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 182, 476
XapI RAATTY 2 cut(s) 251, 320
XhoI CTCGAG 1 cut(s) 209
XmnI GAANNNNTTC 2 cut(s) 240, 251
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.