Rh5AG261200

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000181
Physical Location & Seq
Reverse (-)
34180174 .. 34182570
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG261200.1

Sequence Viewer

Length: 534 bp
ATGTCTCTCTGTGAGGATTTTACAGCTTACGAACGGCTTGGCGCCAACGGCCGCCACCCCGATGTTGCCGGCTTCCTGAAATCACGCGGCATTGTTATGGCAGACACTGATGGTTCTCCTGGACCAAACAGCACTCGCAGTATGTCACGCATCATTCAGAAGTGGTATACAGTCGGCCCCCCTGAGGATAGATGTTTGATTTGTTGCTTGGATGAACACACTTCATTTCTCTGCCCGTACAATGTTGAAGTCCCAAAGAATGCAATTGTAGGCAGCGGCTGTGACATAATTTGTAAGGTTTGTGATCGTTTGTTCTTTGGGCGCTGTTGTAACCAAGATACAGGACATGCTAAGCTCAAGTTTTGTGATATCTGTTTCAAGTATGGCGAACACTGGATGCTGCAGTGCCCACGCAAGCCTGAATGTGATCTCAGTGAAATCGGGGATTCTTCTGATCACTTAATTGCATGTGCAGCTACAGGTCGTCCTCCAATTGTAAATGTGAGGAAGAAAAAGAAGATAAATGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.64

Weight (kDa)

7.88

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 167
AccII CGCG 1 cut(s) 87
AciI CCGC 3 cut(s) 52, 87, 276
AcoI YGGCCR 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 2 cut(s) 248, 379
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 26, 355, 476
AluI AGCT 3 cut(s) 26, 355, 476
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 2 cut(s) 107, 279
AoxI GGCC 2 cut(s) 49, 175
ApeKI GCWGC 3 cut(s) 273, 400, 473
AspLEI GCGC 2 cut(s) 44, 324
AspS9I GGNCC 2 cut(s) 122, 176
AvaII GGWCC 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 285, 387, 485
BccI CCATC 1 cut(s) 104
BceAI ACGGC 2 cut(s) 50, 64
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 401, 477
BfoI RGCGCY 2 cut(s) 45, 325
BisI GCNGC 6 cut(s) 52, 88, 274, 277, 401, 474
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 6 cut(s) 53, 89, 275, 278, 402, 475
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 122, 176
BmiI GGNNCC 2 cut(s) 43, 178
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 159, 387
Bpu1102I GCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 398
Bse21I CCTNAGG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 217, 402
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 174, 445
BseNI ACTGG 1 cut(s) 398
BseSI GKGCMC 1 cut(s) 410
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 285, 387, 485
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 51, 177
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 2 cut(s) 51, 177
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 3 cut(s) 304, 427, 454
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 3 cut(s) 52, 87, 276
BspANI GGCC 2 cut(s) 51, 177
BspCNI CTCAG 2 cut(s) 175, 444
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 43, 178
BspMAI CTGCAG 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 3 cut(s) 304, 427, 454
BssNAI GTATAC 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 42
Bst1107I GTATAC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 70, 416
BstDEI CTNAG 3 cut(s) 183, 351, 431
BstF5I GGATG 2 cut(s) 217, 402
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 2 cut(s) 45, 325
BstHHI GCGC 2 cut(s) 44, 324
BstKTI GATC 3 cut(s) 307, 430, 457
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 304, 427, 454
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 48, 473
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 350, 471
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 2 cut(s) 401, 477
BstSLI GKGCMC 1 cut(s) 410
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 285, 387, 485
BstZ17I GTATAC 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 51, 177
BtsCI GGATG 2 cut(s) 217, 402
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 4 cut(s) 105, 391, 410, 439
Cac8I GCNNGC 2 cut(s) 70, 416
CaiI CAGNNNCTG 2 cut(s) 107, 279
CfoI GCGC 2 cut(s) 44, 324
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 122, 176
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 347, 468
CviJI RGCY 9 cut(s) 26, 37, 51, 72, 177, 279, 355, 418, 476
CviKI_1 RGCY 9 cut(s) 26, 37, 51, 72, 177, 279, 355, 418, 476
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 183, 351, 431
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 306, 429, 456
DpnII GATC 3 cut(s) 304, 427, 454
EaeI YGGCCR 1 cut(s) 49
EagI CGGCCG 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 49
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 122
Eco52I CGGCCG 1 cut(s) 49
Eco81I CCTNAGG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 370
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 2 cut(s) 350, 471
FaiI YATR 7 cut(s) 98, 143, 168, 287, 348, 384, 469
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 346, 467
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 6 cut(s) 52, 88, 274, 277, 401, 474
FokI GGATG 2 cut(s) 224, 409
Fsp4HI GCNGC 6 cut(s) 52, 88, 274, 277, 401, 474
GlaI GCGC 2 cut(s) 43, 323
GluI GCNGC 6 cut(s) 52, 88, 274, 277, 401, 474
HaeII RGCGCY 2 cut(s) 45, 325
HaeIII GGCC 2 cut(s) 51, 177
HapII CCGG 1 cut(s) 69
HhaI GCGC 2 cut(s) 44, 324
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 350, 471
Hin6I GCGC 2 cut(s) 42, 322
HinP1I GCGC 2 cut(s) 42, 322
HinfI GANTC 1 cut(s) 446
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 159, 454
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 263, 403, 467, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 473
HpyF3I CTNAG 3 cut(s) 183, 351, 431
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 350, 471
HspAI GCGC 2 cut(s) 42, 322
KasI GGCGCC 1 cut(s) 41
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 304, 427, 454
LpnPI CCDG 9 cut(s) 82, 89, 105, 132, 195, 327, 379, 432, 465
Lsp1109I GCAGC 3 cut(s) 285, 387, 485
LweI GCATC 2 cut(s) 159, 387
MaeIII GTNAC 3 cut(s) 144, 281, 329
MalI GATC 3 cut(s) 306, 429, 456
MboI GATC 3 cut(s) 304, 427, 454
MboII GAAGA 3 cut(s) 441, 520, 529
MfeI CAATTG 2 cut(s) 264, 492
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 4 cut(s) 264, 288, 462, 492
Mly113I GGCGCC 1 cut(s) 42
MnlI CCTC 4 cut(s) 7, 178, 498, 498
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 2 cut(s) 60, 95
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 120
MunI CAATTG 2 cut(s) 264, 492
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 48, 473
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 1 cut(s) 42
NdeII GATC 3 cut(s) 304, 427, 454
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 2 cut(s) 350, 471
NlaIV GGNNCC 2 cut(s) 43, 178
NmuCI GTSAC 2 cut(s) 144, 281
NspI RCATGY 2 cut(s) 350, 471
PctI GAATGC 1 cut(s) 265
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 6 cut(s) 53, 89, 275, 278, 402, 475
PluTI GGCGCC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 43, 178
PspPI GGNCC 2 cut(s) 122, 176
PstI CTGCAG 1 cut(s) 405
PstNI CAGNNNCTG 2 cut(s) 107, 279
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 2 cut(s) 60, 95
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 6 cut(s) 52, 88, 274, 277, 401, 474
Sau3AI GATC 3 cut(s) 304, 427, 454
Sau96I GGNCC 2 cut(s) 122, 176
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 410
SetI ASST 5 cut(s) 28, 300, 357, 478, 484
SfaNI GCATC 2 cut(s) 159, 387
SfcI CTRYAG 2 cut(s) 401, 477
SfoI GGCGCC 1 cut(s) 43
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 60, 95
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 264, 288, 462, 492
SsiI CCGC 3 cut(s) 52, 87, 276
SspDI GGCGCC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 172
TasI AATT 4 cut(s) 264, 288, 462, 492
TauI GCSGC 3 cut(s) 54, 90, 279
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 4 cut(s) 112, 398, 410, 439
TseFI GTSAC 2 cut(s) 144, 281
TseI GCWGC 3 cut(s) 273, 400, 473
Tsp45I GTSAC 2 cut(s) 144, 281
TspDTI ATGAA 2 cut(s) 213, 228
TspRI CASTG 4 cut(s) 112, 398, 410, 439
VpaK11BI GGWCC 1 cut(s) 122
XceI RCATGY 2 cut(s) 350, 471
XmiI GTMKAC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.