FvH4_1g02340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000181
Physical Location & Seq
Forward (+)
1273970 .. 1276514
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02340.t3

Sequence Viewer

Length: 840 bp
ATGGGTATCGAAATACCAGTTATCTCCGATGTGGATCCGAGCCACTCTCCAACGGCGAAGAAGCGACGATTGGGAGAGTTCGATGTGGAAGAGCTGATCCAGATTCAGCGTATCTATGATTCAGAACCAAAGGATGCTGTTCCAGACGCAAGGAAGTGTGGAGGTCCAGCTAAGCCATCTAGGGAGCAGCTCAAGAAAATCAATGAAGTGGTTTTTCGGAAGTTCTTCGAAGGAAATGAGATTGATGATGAGGACTCAGGTGAAGAAATGAAACCTTGTGAAATTGGTATGAAGGAGGAGGACTTGCCAAATGATTGCCCGTACCTGCAGTGTATTCCAAACCCCAAAGACACACATGTTGGCAAGGATGAGACTGATGATGAGGACTCAGATAAAGTAATGAAACCTTGTGATGTTTGTATGGAGGAGCATCCGGATCACCTGCCAAATCTTTGCCCGTACCTGGAGTGTATTCCAAATCCCAAGGATACACATGTTGGCAAGGATGAGACTAATGATGAGGACTCAGATGAAGAAATGATACCACCTTGTGAAGTTTGTCTGAAGGAGAATCCGGATCACTTTTCAAATGGTTGCCCGTACCTGGAGCGTGTCCCAAATCCAAAGGACACAGCTGTTGGCAAGGCCTTTATGATAGTCTGCATCCACTGCTTTCTGGAGAAGCATGGCCACCCTGATGGAGCCTGGCAAGGATGTGCAATGCTAGATCCGAGGTTCTTTTATGATCGAGAGCCTGCAGATGACGAGCCTCCCCTTAAAGATGAGAGTGAATACTTTGCTTGGCTTAAGGTGGGTGTTTCTCATTTCTCTCGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.72

Weight (kDa)

4.54

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 450
Acc36I ACCTGC 2 cut(s) 333, 450
AccIII TCCGGA 2 cut(s) 433, 574
AclWI GGATC 6 cut(s) 29, 42, 91, 444, 585, 722
AcoI YGGCCR 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 584
AdeI CACNNNGTG 1 cut(s) 551
AfaI GTAC 3 cut(s) 323, 461, 602
AfiI CCNNNNNNNGG 2 cut(s) 463, 604
AflII CTTAAG 1 cut(s) 806
AflIII ACRYGT 2 cut(s) 355, 493
AgsI TTSAA 1 cut(s) 588
AjnI CCWGG 3 cut(s) 462, 603, 704
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 4 cut(s) 94, 170, 190, 635
AluI AGCT 4 cut(s) 94, 170, 190, 635
Alw26I GTCTC 2 cut(s) 365, 503
AlwI GGATC 6 cut(s) 29, 42, 91, 444, 585, 722
Aor13HI TCCGGA 2 cut(s) 433, 574
AoxI GGCC 2 cut(s) 645, 688
ApeKI GCWGC 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 272, 431
AsuII TTCGAA 1 cut(s) 228
AvaII GGWCC 1 cut(s) 164
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BalI TGGCCA 1 cut(s) 690
BamHI GGATCC 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 525, 557
BauI CACGAG 1 cut(s) 831
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 184, 692
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 3 cut(s) 464, 605, 706
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 365, 503
BfaI CTAG 2 cut(s) 180, 725
BfmI CTRYAG 2 cut(s) 326, 756
BfrI CTTAAG 1 cut(s) 806
BfuAI ACCTGC 2 cut(s) 333, 450
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 1 cut(s) 188
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 3 cut(s) 464, 605, 706
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 36, 703
BmrFI CCNGG 3 cut(s) 464, 605, 706
BmsI GCATC 3 cut(s) 124, 439, 672
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpmI CTGGAG 3 cut(s) 485, 626, 698
Bpu1102I GCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 483, 731
BsaWI WCCGGW 2 cut(s) 433, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 604
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 33
BseAI TCCGGA 2 cut(s) 433, 574
BseBI CCWGG 3 cut(s) 464, 605, 706
BseDI CCNNGG 2 cut(s) 483, 731
BseGI GGATG 6 cut(s) 139, 373, 430, 511, 663, 719
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 463, 604
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 3 cut(s) 270, 402, 540
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 311, 440
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 647, 690
BsiSI CCGG 2 cut(s) 434, 575
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 463, 604
BsmAI GTCTC 2 cut(s) 365, 503
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 2 cut(s) 647, 690
Bsp119I TTCGAA 1 cut(s) 228
Bsp13I TCCGGA 2 cut(s) 433, 574
Bsp143I GATC 6 cut(s) 34, 96, 436, 577, 727, 745
Bsp1720I GCTNAGC 1 cut(s) 171
BspANI GGCC 2 cut(s) 647, 690
BspCNI CTCAG 3 cut(s) 269, 401, 539
BspEI TCCGGA 2 cut(s) 433, 574
BspLI GGNNCC 2 cut(s) 36, 703
BspMAI CTGCAG 2 cut(s) 330, 760
BspMI ACCTGC 2 cut(s) 333, 450
BspPI GGATC 6 cut(s) 29, 42, 91, 444, 585, 722
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 228
BspTI CTTAAG 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 726
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 483, 731
BssMI GATC 6 cut(s) 34, 96, 436, 577, 727, 745
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 483
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 3 cut(s) 464, 605, 706
Bst6I CTCTTC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 806
BstAPI GCANNNNNTGC 1 cut(s) 669
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 4 cut(s) 171, 256, 388, 526
BstF5I GGATG 6 cut(s) 139, 373, 430, 511, 663, 719
BstKTI GATC 6 cut(s) 37, 99, 439, 580, 730, 748
BstMAI GTCTC 2 cut(s) 365, 503
BstMBI GATC 6 cut(s) 34, 96, 436, 577, 727, 745
BstMWI GCNNNNNNNGC 1 cut(s) 669
BstNI CCWGG 3 cut(s) 464, 605, 706
BstNSI RCATGY 2 cut(s) 359, 497
BstSCI CCNGG 3 cut(s) 462, 603, 704
BstSFI CTRYAG 2 cut(s) 326, 756
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 34, 727
BstXI CCANNNNNNTGG 1 cut(s) 698
BstYI RGATCY 2 cut(s) 34, 727
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 2 cut(s) 647, 690
BtsCI GGATG 6 cut(s) 139, 373, 430, 511, 663, 719
BtsI GCAGTG 2 cut(s) 335, 667
BtsIMutI CAGTG 2 cut(s) 335, 667
BveI ACCTGC 2 cut(s) 333, 450
Cac8I GCNNGC 1 cut(s) 756
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 155
Csp6I GTAC 3 cut(s) 322, 460, 601
CviAII CATG 3 cut(s) 356, 494, 686
CviQI GTAC 3 cut(s) 322, 460, 601
DdeI CTNAG 4 cut(s) 171, 256, 388, 526
DpnI GATC 6 cut(s) 36, 98, 438, 579, 729, 747
DpnII GATC 6 cut(s) 34, 96, 436, 577, 727, 745
DraIII CACNNNGTG 1 cut(s) 551
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 647
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 584
EcoRII CCWGG 3 cut(s) 462, 603, 704
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 3 cut(s) 359, 497, 689
FaiI YATR 8 cut(s) 117, 290, 357, 422, 495, 653, 687, 744
FaqI GGGAC 1 cut(s) 599
FatI CATG 3 cut(s) 355, 493, 685
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 6 cut(s) 146, 380, 417, 518, 650, 726
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 2 cut(s) 180, 725
GluI GCNGC 1 cut(s) 188
GsuI CTGGAG 3 cut(s) 485, 626, 698
HaeIII GGCC 2 cut(s) 647, 690
HapII CCGG 2 cut(s) 434, 575
HgaI GACGC 1 cut(s) 155
Hin1II CATG 3 cut(s) 359, 497, 689
HinfI GANTC 6 cut(s) 103, 119, 254, 386, 524, 571
HpaII CCGG 2 cut(s) 434, 575
HphI GGTGA 2 cut(s) 272, 431
Hpy188I TCNGA 8 cut(s) 28, 39, 124, 219, 391, 529, 564, 732
Hpy188III TCNNGA 7 cut(s) 100, 143, 193, 434, 575, 677, 749
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 3 cut(s) 224, 286, 559
HpyCH4V TGCA 4 cut(s) 328, 663, 719, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 669
HpyF3I CTNAG 4 cut(s) 171, 256, 388, 526
Hsp92II CATG 3 cut(s) 359, 497, 689
Kpn2I TCCGGA 2 cut(s) 433, 574
Kzo9I GATC 6 cut(s) 34, 96, 436, 577, 727, 745
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 4 cut(s) 184, 427, 607, 701
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 3 cut(s) 124, 439, 672
MaeI CTAG 2 cut(s) 180, 725
MalI GATC 6 cut(s) 36, 98, 438, 579, 729, 747
MboI GATC 6 cut(s) 34, 96, 436, 577, 727, 745
MboII GAAGA 5 cut(s) 70, 101, 217, 275, 545
MflI RGATCY 2 cut(s) 34, 727
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 1 cut(s) 282
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 3 cut(s) 248, 380, 518
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 9 cut(s) 155, 244, 289, 292, 376, 418, 514, 726, 780
Mox20I TGGCCA 1 cut(s) 690
MroI TCCGGA 2 cut(s) 433, 574
MroXI GAANNNNTTC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 690
MseI TTAA 2 cut(s) 777, 807
MslI CAYNNNNRTG 1 cut(s) 696
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 635
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 2 cut(s) 434, 575
MspR9I CCNGG 3 cut(s) 464, 605, 706
MvaI CCWGG 3 cut(s) 464, 605, 706
MwoI GCNNNNNNNGC 1 cut(s) 669
NdeII GATC 6 cut(s) 34, 96, 436, 577, 727, 745
NlaIII CATG 3 cut(s) 359, 497, 689
NlaIV GGNNCC 2 cut(s) 36, 703
NspI RCATGY 2 cut(s) 359, 497
NspV TTCGAA 1 cut(s) 228
PaqCI CACCTGC 1 cut(s) 450
PceI AGGCCT 1 cut(s) 647
PciI ACATGT 2 cut(s) 355, 493
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 3 cut(s) 103, 119, 571
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 3 cut(s) 248, 380, 518
PpsI GAGTC 3 cut(s) 248, 380, 518
PscI ACATGT 2 cut(s) 355, 493
Psp6I CCWGG 3 cut(s) 462, 603, 704
PspGI CCWGG 3 cut(s) 462, 603, 704
PspN4I GGNNCC 2 cut(s) 36, 703
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 2 cut(s) 330, 760
PsuI RGATCY 2 cut(s) 34, 727
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 3 cut(s) 323, 461, 602
RsaNI GTAC 3 cut(s) 322, 460, 601
RseI CAYNNNNRTG 1 cut(s) 696
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 777, 807
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 6 cut(s) 34, 96, 436, 577, 727, 745
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 3 cut(s) 248, 380, 518
ScrFI CCNGG 3 cut(s) 464, 605, 706
SfaNI GCATC 3 cut(s) 124, 439, 672
SfcI CTRYAG 2 cut(s) 326, 756
SfuI TTCGAA 1 cut(s) 228
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 2 cut(s) 191, 806
SmoI CTYRAG 2 cut(s) 191, 806
Sse9I AATT 1 cut(s) 282
SseBI AGGCCT 1 cut(s) 647
SspMI CTAG 2 cut(s) 180, 725
StuI AGGCCT 1 cut(s) 647
StyD4I CCNGG 3 cut(s) 462, 603, 704
StyI CCWWGG 1 cut(s) 483
TaqI TCGA 4 cut(s) 9, 81, 228, 748
TasI AATT 1 cut(s) 282
TfiI GAWTC 3 cut(s) 103, 119, 571
Tru1I TTAA 2 cut(s) 777, 807
Tru9I TTAA 2 cut(s) 777, 807
TscAI CASTG 2 cut(s) 335, 674
TseI GCWGC 1 cut(s) 187
TspDTI ATGAA 5 cut(s) 219, 284, 305, 416, 546
TspRI CASTG 2 cut(s) 335, 674
Vha464I CTTAAG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 164
XceI RCATGY 2 cut(s) 359, 497
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 2 cut(s) 180, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.