FvH4_6g48861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Forward (+)
36699949 .. 36701757
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48861.t1

Sequence Viewer

Length: 762 bp
ATGGATGTGAGTGGCGACCAACCGACAATCGGCGGCCCCGCCGGGGCTGAGGCAGGCTGCGGGAGCCGGAAGCGGCTAGACGGATCTTATGACTTGGAACAGGTGCTCTATGACGCCTCTAAGAAAGCAAAGATTTCGGAACAAGAATTACAAGAGATACATGCAAAGATGAACAAGGGTGCCGATCCTAACAAAAAATTGTCTGAACAACAAGCCGGAGCCCTAAGAAGGATCATAGATGGTTGGAAAGTTCGAGGAGAGGTACTTATCTTGCCTTTCGAGGAATTCCAAGAGACCATGTTTATGAATGAAGCGGAATGTCAAAAGTTATACGAGGAACTTGAAGAAGCCGAGGCAGCCAAACAGCAAGCTAAAGCGCTTAGGAAACTGAAGATAGCTGAAAAAAAACAAACAGGTAAGCCCGACGAAGAAGACTCAGATGAAGAACTTCGACATTGTGAAGTTTGTATGAAGCTCGTGGACCACTGGTCATATCAGTGTCCCTACTTGGACGACGTTCCAAACCCCGAGAACACAACTGTTGGCGAGGGCTATGAAATACGTTGCCTTCACTGCAATAAGTCAGATCATGGCCACCCTGATGGAGGCTGGCCAGGATATGCATGTAAAAAGAGAAGATATTATAGGACAAGGGTGATGACCCCTGATGAGGAAGTCTCAGATTCAGAATCAGATGAAGAAGACAAAGATTCAGAATCAGATGAAGAAGACTCAGATGAAGAATCAGGTGAAGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.66

Weight (kDa)

4.59

Isoelectric Point (pI)

64.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 5 cut(s) 33, 39, 60, 73, 314
AclWI GGATC 3 cut(s) 91, 179, 239
AcoI YGGCCR 2 cut(s) 592, 611
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 264
AfeI AGCGCT 1 cut(s) 378
AfiI CCNNNNNNNGG 5 cut(s) 29, 43, 228, 605, 670
AgsI TTSAA 1 cut(s) 344
AhdI GACNNNNNGTC 1 cut(s) 487
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 3 cut(s) 371, 398, 475
AluI AGCT 3 cut(s) 371, 398, 475
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 287, 682
AlwI GGATC 3 cut(s) 91, 179, 239
Ama87I CYCGRG 1 cut(s) 527
Aor51HI AGCGCT 1 cut(s) 378
AoxI GGCC 3 cut(s) 34, 592, 611
ApeKI GCWGC 2 cut(s) 57, 356
ApoI RAATTY 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 35, 481
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 667, 761
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 481
BalI TGGCCA 2 cut(s) 594, 613
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 223
BauI CACGAG 1 cut(s) 476
BbsI GAAGAC 3 cut(s) 438, 708, 735
Bbv12I GWGCWC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 44, 368
BccI CCATC 2 cut(s) 233, 596
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BciT130I CCWGG 1 cut(s) 615
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 287, 682
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 380
BisI GCNGC 4 cut(s) 34, 58, 74, 357
BlsI GCNGC 4 cut(s) 35, 59, 75, 358
Bme1390I CCNGG 2 cut(s) 43, 615
Bme18I GGWCC 1 cut(s) 481
BmeRI GACNNNNNGTC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 35, 481
BmiI GGNNCC 4 cut(s) 37, 65, 181, 220
BmrFI CCNGG 2 cut(s) 43, 615
BpiI GAAGAC 3 cut(s) 438, 708, 735
BplI GAGNNNNNCTC 2 cut(s) 662, 694
Bpu10I CCTNAGC 2 cut(s) 48, 380
BpuMI CCSGG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 42, 351
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 43, 228, 605, 670
Bse1I ACTGG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 42, 351
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 5 cut(s) 29, 43, 228, 605, 670
BseMII CTCAG 4 cut(s) 39, 450, 693, 747
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 44, 368
BshFI GGCC 3 cut(s) 36, 594, 613
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 3 cut(s) 42, 67, 216
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 5 cut(s) 29, 43, 228, 605, 670
BsmAI GTCTC 2 cut(s) 287, 682
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 3 cut(s) 36, 594, 613
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 108, 223
Bsp143I GATC 4 cut(s) 83, 184, 231, 586
BspACI CCGC 5 cut(s) 33, 39, 60, 73, 314
BspANI GGCC 3 cut(s) 36, 594, 613
BspCNI CTCAG 4 cut(s) 40, 449, 692, 746
BspLI GGNNCC 4 cut(s) 37, 65, 181, 220
BspPI GGATC 3 cut(s) 91, 179, 239
BspQI GCTCTTC 1 cut(s) 747
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 2 cut(s) 42, 351
BssMI GATC 4 cut(s) 83, 184, 231, 586
BssNI GRCGYC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 476
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 1 cut(s) 747
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 55, 369, 611
BstDEI CTNAG 7 cut(s) 48, 120, 224, 380, 436, 679, 733
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 4 cut(s) 86, 187, 234, 589
BstMAI GTCTC 2 cut(s) 287, 682
BstMBI GATC 4 cut(s) 83, 184, 231, 586
BstMWI GCNNNNNNNGC 3 cut(s) 63, 356, 573
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 2 cut(s) 164, 627
BstSCI CCNGG 2 cut(s) 41, 613
BstV1I GCAGC 2 cut(s) 44, 368
BstV2I GAAGAC 3 cut(s) 438, 708, 735
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 3 cut(s) 36, 594, 613
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 3 cut(s) 484, 503, 571
Cac8I GCNNGC 3 cut(s) 55, 369, 611
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 35, 481
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 263
CviAII CATG 4 cut(s) 161, 298, 590, 624
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 7 cut(s) 48, 120, 224, 380, 436, 679, 733
DpnI GATC 4 cut(s) 85, 186, 233, 588
DpnII GATC 4 cut(s) 83, 184, 231, 586
DriI GACNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 2 cut(s) 592, 611
Eam1104I CTCTTC 1 cut(s) 747
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 481
Eco47III AGCGCT 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 527
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 613
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 223
FaeI CATG 4 cut(s) 164, 301, 593, 627
FaqI GGGAC 1 cut(s) 486
FatI CATG 4 cut(s) 160, 297, 589, 623
FauI CCCGC 2 cut(s) 46, 53
Fnu4HI GCNGC 4 cut(s) 34, 58, 74, 357
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 4 cut(s) 34, 58, 74, 357
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 378
GluI GCNGC 4 cut(s) 34, 58, 74, 357
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 3 cut(s) 36, 594, 613
HapII CCGG 3 cut(s) 42, 67, 216
HgaI GACGC 1 cut(s) 122
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 164, 301, 593, 627
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 7 cut(s) 434, 683, 689, 710, 716, 731, 743
HpaII CCGG 3 cut(s) 42, 67, 216
HphI GGTGA 2 cut(s) 667, 761
Hpy166II GTNNAC 1 cut(s) 481
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 2 cut(s) 428, 518
HpyAV CCTTC 2 cut(s) 222, 578
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 2 cut(s) 516, 562
HpyCH4V TGCA 3 cut(s) 164, 576, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 356, 573
HpyF3I CTNAG 7 cut(s) 48, 120, 224, 380, 436, 679, 733
HpySE526I ACGT 2 cut(s) 516, 562
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 164, 301, 593, 627
HspAI GCGC 1 cut(s) 377
Kzo9I GATC 4 cut(s) 83, 184, 231, 586
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 2 cut(s) 63, 218
Lsp1109I GCAGC 2 cut(s) 44, 368
MaeI CTAG 1 cut(s) 77
MaeII ACGT 2 cut(s) 516, 562
MalI GATC 4 cut(s) 85, 186, 233, 588
MboI GATC 4 cut(s) 83, 184, 231, 586
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 2 cut(s) 108, 223
MlsI TGGCCA 2 cut(s) 594, 613
MluCI AATT 3 cut(s) 146, 197, 284
MluNI TGGCCA 2 cut(s) 594, 613
MlyI GAGTC 2 cut(s) 428, 725
MmeI TCCRAC 1 cut(s) 224
Mox20I TGGCCA 2 cut(s) 594, 613
Mph1103I ATGCAT 1 cut(s) 625
MroXI GAANNNNTTC 1 cut(s) 447
MscI TGGCCA 2 cut(s) 594, 613
MseI TTAA 1 cut(s) 760
MslI CAYNNNNRTG 3 cut(s) 302, 496, 600
Msp20I TGGCCA 2 cut(s) 594, 613
MspI CCGG 3 cut(s) 42, 67, 216
MspR9I CCNGG 2 cut(s) 43, 615
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 3 cut(s) 63, 356, 573
NciI CCSGG 1 cut(s) 43
NdeII GATC 4 cut(s) 83, 184, 231, 586
NlaIII CATG 4 cut(s) 164, 301, 593, 627
NlaIV GGNNCC 4 cut(s) 37, 65, 181, 220
NmeAIII GCCGAG 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 2 cut(s) 164, 627
PciSI GCTCTTC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 5 cut(s) 683, 689, 710, 716, 743
PkrI GCNGC 4 cut(s) 35, 59, 75, 358
PleI GAGTC 2 cut(s) 428, 725
PpsI GAGTC 2 cut(s) 428, 725
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 4 cut(s) 37, 65, 181, 220
PspPI GGNCC 2 cut(s) 35, 481
PsrI GAACNNNNNNTAC 2 cut(s) 132, 164
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
RseI CAYNNNNRTG 3 cut(s) 302, 496, 600
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 1 cut(s) 760
SatI GCNGC 4 cut(s) 34, 58, 74, 357
Sau3AI GATC 4 cut(s) 83, 184, 231, 586
Sau96I GGNCC 2 cut(s) 35, 481
SchI GAGTC 2 cut(s) 428, 725
ScrFI CCNGG 2 cut(s) 43, 615
SduI GDGCHC 2 cut(s) 108, 223
SetI ASST 9 cut(s) 105, 264, 373, 400, 418, 477, 519, 565, 751
SinI GGWCC 1 cut(s) 481
SmiMI CAYNNNNRTG 3 cut(s) 302, 496, 600
Sse9I AATT 3 cut(s) 146, 197, 284
SsiI CCGC 5 cut(s) 33, 39, 60, 73, 314
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 41, 613
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 2 cut(s) 519, 565
TaqI TCGA 3 cut(s) 253, 279, 451
TasI AATT 3 cut(s) 146, 197, 284
TauI GCSGC 2 cut(s) 36, 76
TfiI GAWTC 5 cut(s) 683, 689, 710, 716, 743
Tru1I TTAA 1 cut(s) 760
Tru9I TTAA 1 cut(s) 760
TscAI CASTG 3 cut(s) 491, 503, 578
TseI GCWGC 2 cut(s) 57, 356
TspDTI ATGAA 9 cut(s) 185, 320, 324, 456, 485, 570, 711, 738, 753
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 3 cut(s) 491, 503, 578
VpaK11BI GGWCC 1 cut(s) 481
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 1 cut(s) 284
XceI RCATGY 2 cut(s) 164, 627
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.