RchiOBHm_Chr5g0038691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000181
Physical Location & Seq
Forward (+)
33375371 .. 33377114
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31729

Sequence Viewer

Length: 639 bp
ATGAGCATAAAAAACCGAATCCCTAATACGTTGTCTCCCACAGGCGAAACCATGTCTCTCGCGATCCCAGCCCAGCCGCCCAGCCTCAACCTCACAGATCAGGACGACAAGATCCGCAATCATGGTACCGGCTCAAAAGACTCGAAGCTTGCTGGAAAGTCTTTGACTCAACAATTTGACTACTTGTCGCTGGCTCTGCCTCTCCCTCTCCCTCATGAACAAGAAGAAGAATCAGCAAAGGGGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGGTGAAGACGAGGAAGAAGTATTTGACGTTTGTCGTGTTTGCTTGAAGGACAAGGAACACTGGACATTTGATTGCCCGTATCTGGATCGCATCCCGAACCCGAAGACGACAACTGTTGGCAGTGGCTATGCAATAGTTTGTAGAGGATGTCATGTGTTGGGTGGCCATGGTGATAGGGCCTGGGTAGGACGTGCCATTATGAAGTCTTGTAGTATTTGTGAGGTACCAGCTTCTCACTGGAATTACGAATGCCCAAAAAACCCCGACCCCAGAAAGTATGACTATTCGAAAAATCGTAAGGTGTTGAAGCAAGAGGTCTATAGTGTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.02

Weight (kDa)

4.59

Isoelectric Point (pI)

68.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 85 - 131 2.4e-07 Eukaryotic translation initiation factor 3 subunit G
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 125, 529
AccB1I GGYRCC 2 cut(s) 125, 529
AccII CGCG 1 cut(s) 62
AciI CCGC 2 cut(s) 77, 115
AclWI GGATC 3 cut(s) 58, 106, 399
AcoI YGGCCR 1 cut(s) 469
AfaI GTAC 2 cut(s) 127, 531
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 2 cut(s) 352, 613
AhdI GACNNNNNGTC 1 cut(s) 184
AjiI CACGTC 1 cut(s) 497
AjnI CCWGG 1 cut(s) 485
AluBI AGCT 2 cut(s) 148, 536
AluI AGCT 2 cut(s) 148, 536
Alw26I GTCTC 2 cut(s) 39, 60
AlwI GGATC 3 cut(s) 58, 106, 399
AoxI GGCC 2 cut(s) 469, 483
Asp718I GGTACC 2 cut(s) 125, 529
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 320, 488
AsuII TTCGAA 1 cut(s) 593
BalI TGGCCA 1 cut(s) 471
BanI GGYRCC 2 cut(s) 125, 529
BbsI GAAGAC 2 cut(s) 318, 416
BciT130I CCWGG 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 39, 60
BfmI CTRYAG 1 cut(s) 625
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 487
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 2 cut(s) 127, 531
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 405
BoxI GACNNNNGTC 1 cut(s) 336
BpiI GAAGAC 2 cut(s) 318, 416
Bpu14I TTCGAA 1 cut(s) 593
BsaJI CCNNGG 2 cut(s) 472, 486
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 371, 548
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 472, 486
BseGI GGATG 2 cut(s) 396, 458
BseLI CCNNNNNNNGG 1 cut(s) 388
BseNI ACTGG 2 cut(s) 371, 548
BseRI GAGGAG 3 cut(s) 263, 266, 269
BseYI CCCAGC 3 cut(s) 67, 72, 80
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 471, 485
BshNI GGYRCC 2 cut(s) 125, 529
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 2 cut(s) 39, 60
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 2 cut(s) 471, 485
Bsp119I TTCGAA 1 cut(s) 593
Bsp143I GATC 4 cut(s) 63, 97, 111, 391
Bsp19I CCATGG 1 cut(s) 472
Bsp68I TCGCGA 1 cut(s) 62
BspACI CCGC 2 cut(s) 77, 115
BspANI GGCC 2 cut(s) 471, 485
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 127, 531
BspPI GGATC 3 cut(s) 58, 106, 399
BspT104I TTCGAA 1 cut(s) 593
BspT107I GGYRCC 2 cut(s) 125, 529
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 2 cut(s) 371, 548
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 472, 486
BssMI GATC 4 cut(s) 63, 97, 111, 391
BssT1I CCWWGG 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 2 cut(s) 240, 297
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 150, 192
BstDSI CCRYGG 1 cut(s) 472
BstF5I GGATG 2 cut(s) 396, 458
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 4 cut(s) 66, 100, 114, 394
BstMAI GTCTC 2 cut(s) 39, 60
BstMBI GATC 4 cut(s) 63, 97, 111, 391
BstMWI GCNNNNNNNGC 2 cut(s) 68, 196
BstNI CCWGG 1 cut(s) 487
BstPAI GACNNNNGTC 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 1 cut(s) 625
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 318, 416
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 2 cut(s) 471, 485
BtgI CCRYGG 1 cut(s) 472
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 2 cut(s) 396, 458
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 3 cut(s) 364, 433, 541
BtuMI TCGCGA 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 150, 192
CciI TCATGA 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 483
Csp6I GTAC 2 cut(s) 126, 530
CviAII CATG 6 cut(s) 52, 122, 215, 458, 473, 636
CviQI GTAC 2 cut(s) 126, 530
DpnI GATC 4 cut(s) 65, 99, 113, 393
DpnII GATC 4 cut(s) 63, 97, 111, 391
DriI GACNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 240, 297
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 2 cut(s) 240, 297
Eco130I CCWWGG 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 6 cut(s) 55, 125, 218, 461, 476, 639
FatI CATG 6 cut(s) 51, 121, 214, 457, 472, 635
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 2 cut(s) 383, 465
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
GsaI CCCAGC 3 cut(s) 71, 76, 84
HaeIII GGCC 2 cut(s) 471, 485
HapII CCGG 1 cut(s) 129
Hin1II CATG 6 cut(s) 55, 125, 218, 461, 476, 639
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 4 cut(s) 18, 140, 166, 230
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 320, 488
Hpy188III TCNNGA 5 cut(s) 61, 101, 215, 389, 400
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 3 cut(s) 29, 333, 496
HpyCH4V TGCA 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 196
HpySE526I ACGT 3 cut(s) 29, 333, 496
Hsp92II CATG 6 cut(s) 55, 125, 218, 461, 476, 639
KpnI GGTACC 2 cut(s) 129, 533
Kzo9I GATC 4 cut(s) 63, 97, 111, 391
LweI GCATC 1 cut(s) 405
MaeII ACGT 3 cut(s) 29, 333, 496
MalI GATC 4 cut(s) 65, 99, 113, 393
MboI GATC 4 cut(s) 63, 97, 111, 391
MflI RGATCY 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 2 cut(s) 173, 547
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 2 cut(s) 134, 160
Mox20I TGGCCA 1 cut(s) 471
MscI TGGCCA 1 cut(s) 471
Msp20I TGGCCA 1 cut(s) 471
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 487
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 1 cut(s) 487
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 68, 196
NcoI CCATGG 1 cut(s) 472
NdeII GATC 4 cut(s) 63, 97, 111, 391
NlaIII CATG 6 cut(s) 55, 125, 218, 461, 476, 639
NlaIV GGNNCC 2 cut(s) 127, 531
NruI TCGCGA 1 cut(s) 62
NspV TTCGAA 1 cut(s) 593
PagI TCATGA 1 cut(s) 214
PctI GAATGC 1 cut(s) 560
PfeI GAWTC 2 cut(s) 18, 230
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 2 cut(s) 134, 160
PpsI GAGTC 2 cut(s) 134, 160
PshAI GACNNNNGTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 485
PspFI CCCAGC 3 cut(s) 67, 72, 80
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 2 cut(s) 127, 531
PspPI GGNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 111
RruI TCGCGA 1 cut(s) 62
RsaI GTAC 2 cut(s) 127, 531
RsaNI GTAC 2 cut(s) 126, 530
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 4 cut(s) 63, 97, 111, 391
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 134, 160
ScrFI CCNGG 1 cut(s) 487
SetI ASST 9 cut(s) 32, 93, 150, 336, 499, 531, 538, 609, 624
SfaNI GCATC 1 cut(s) 405
SfcI CTRYAG 1 cut(s) 625
SfuI TTCGAA 1 cut(s) 593
Sse9I AATT 2 cut(s) 173, 547
SsiI CCGC 2 cut(s) 77, 115
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 3 cut(s) 32, 336, 499
TaqI TCGA 2 cut(s) 143, 593
TasI AATT 2 cut(s) 173, 547
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 2 cut(s) 18, 230
TscAI CASTG 3 cut(s) 371, 433, 548
TspDTI ATGAA 2 cut(s) 231, 521
TspRI CASTG 3 cut(s) 371, 433, 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.