MD05G1007300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000181
Physical Location & Seq
Reverse (-)
1766708 .. 1769419
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1007300.v1.1.491

Sequence Viewer

Length: 726 bp
ATGATCCACCGCACTTTCAGATCCGCTCCCGTGATCGGCCGAGTACAGAAATGCGTTGCCATGTTCCACCGTGCAATCGGCGGACAAGCAGAAGCCCACGCGAAAGCCAAGTCAGAATCGGTCCAGGAGCAGAAGAGAGGGACTCGTAATCGTCGTATTCATCACAAGGCAATAGAACCAAAAATTCGTGGAGATGTAACCAAAAAACCAGAGAGTCGTGGTGAAGTGATTCGTATGGGACGTGCCAGTCTTGTGGATGATCCTGTTTGCGGTGTGGCCCAAGGAAAGAAGGACTTCGAAGCAGAATTAGCAGCAGCAAAACTTAAATATGGTCCTTGTGGAGTTTGCGGAAAGGAGAAAGACCACAGGCTTGCTGATTGCCCTTACAAAAAACATATCCCAAACCCTCTGGAGGTAACTGTTCTTGATGGTAGGTATGGAATAGTTTGTAAGTGTTGTGGTCAACCTGGTGGGCACCCTGGTCGCCGGGGCTGGACTGGACGTGCTATTCTCAAGTTTTGTAGCCATTGTATAGTATGGGGTGAGCACTGGACTGCAGATTGCCCGTGTGTTGAGCCCGATGAAGTTGAGAAATGGAGAAAGGACATTAAAGAGGTTGAATGTTATTGTTTGAGAGAGGAACCCGAGAAAGAAGAATTTCTGGACTTAGAACCATATTTTAGGGCCGTGCAAAGGAAGGATGAGGAAAATGAATATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.34

Weight (kDa)

8.59

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 474
AccBSI CCGCTC 1 cut(s) 26
AccII CGCG 1 cut(s) 101
AciI CCGC 5 cut(s) 10, 24, 81, 270, 348
AclWI GGATC 2 cut(s) 15, 254
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 2 cut(s) 183, 656
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 4 cut(s) 35, 269, 412, 693
AgsI TTSAA 1 cut(s) 620
AjiI CACGTC 2 cut(s) 242, 503
AjnI CCWGG 3 cut(s) 123, 466, 478
Alw21I GWGCWC 1 cut(s) 549
AlwI GGATC 2 cut(s) 15, 254
Ama87I CYCGRG 1 cut(s) 644
AoxI GGCC 3 cut(s) 37, 276, 684
ApeKI GCWGC 2 cut(s) 311, 314
ApoI RAATTY 2 cut(s) 183, 656
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp700I GAANNNNTTC 3 cut(s) 228, 293, 657
AspS9I GGNCC 4 cut(s) 121, 277, 332, 684
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 2 cut(s) 233, 554
AsuII TTCGAA 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 644
AvaII GGWCC 2 cut(s) 121, 332
BaeGI GKGCMC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 474
BanII GRGCYC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 323, 326
BccI CCATC 1 cut(s) 422
BceAI ACGGC 1 cut(s) 671
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 3 cut(s) 125, 468, 480
BcnI CCSGG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 2 cut(s) 312, 315
BlsI GCNGC 2 cut(s) 313, 316
Bme1390I CCNGG 4 cut(s) 125, 468, 480, 488
Bme18I GGWCC 2 cut(s) 121, 332
BmeT110I CYCGRG 1 cut(s) 644
BmgBI CACGTC 2 cut(s) 242, 503
BmgT120I GGNCC 4 cut(s) 121, 277, 332, 684
BmiI GGNNCC 2 cut(s) 476, 642
BmrFI CCNGG 4 cut(s) 125, 468, 480, 488
BmsI GCATC 1 cut(s) 709
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BpmI CTGGAG 1 cut(s) 431
Bpu14I TTCGAA 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 280, 478, 487
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 269, 412, 693
Bse1I ACTGG 3 cut(s) 246, 502, 554
BseBI CCWGG 3 cut(s) 125, 468, 480
BseDI CCNNGG 3 cut(s) 280, 478, 487
BseGI GGATG 2 cut(s) 262, 706
BseLI CCNNNNNNNGG 4 cut(s) 35, 269, 412, 693
BseNI ACTGG 3 cut(s) 246, 502, 554
BseSI GKGCMC 1 cut(s) 477
BseX3I CGGCCG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 323, 326
Bsh1236I CGCG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 3 cut(s) 39, 278, 686
BshNI GGYRCC 1 cut(s) 474
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 1 cut(s) 487
BslFI GGGAC 2 cut(s) 154, 252
BslI CCNNNNNNNGG 4 cut(s) 35, 269, 412, 693
BsmFI GGGAC 2 cut(s) 154, 252
BsnI GGCC 3 cut(s) 39, 278, 686
BsoBI CYCGRG 1 cut(s) 644
Bsp119I TTCGAA 1 cut(s) 297
Bsp1286I GDGCHC 3 cut(s) 477, 549, 579
Bsp143I GATC 4 cut(s) 3, 20, 33, 259
BspACI CCGC 5 cut(s) 10, 24, 81, 270, 348
BspANI GGCC 3 cut(s) 39, 278, 686
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 476, 642
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 2 cut(s) 15, 254
BspT104I TTCGAA 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 474
BsrBI CCGCTC 1 cut(s) 26
BsrI ACTGG 3 cut(s) 246, 502, 554
BssECI CCNNGG 3 cut(s) 280, 478, 487
BssMI GATC 4 cut(s) 3, 20, 33, 259
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 3 cut(s) 125, 468, 480
Bst4CI ACNGT 2 cut(s) 71, 421
Bst6I CTCTTC 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 667
BstF5I GGATG 2 cut(s) 262, 706
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 4 cut(s) 6, 23, 36, 262
BstMBI GATC 4 cut(s) 3, 20, 33, 259
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 3 cut(s) 125, 468, 480
BstSCI CCNGG 4 cut(s) 123, 466, 478, 486
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 477
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 323, 326
BstX2I RGATCY 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 20
BstZI CGGCCG 1 cut(s) 37
BsuRI GGCC 3 cut(s) 39, 278, 686
BtrI CACGTC 2 cut(s) 242, 503
BtsCI GGATG 2 cut(s) 262, 706
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 372
Cfr13I GGNCC 4 cut(s) 121, 277, 332, 684
CsiI ACCWGGT 1 cut(s) 466
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 61
CviJI RGCY 9 cut(s) 39, 95, 107, 278, 370, 492, 525, 577, 686
CviKI_1 RGCY 9 cut(s) 39, 95, 107, 278, 370, 492, 525, 577, 686
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 667
DpnI GATC 4 cut(s) 5, 22, 35, 261
DpnII GATC 4 cut(s) 3, 20, 33, 259
DrdI GACNNNNNNGTC 1 cut(s) 246
DseDI GACNNNNNNGTC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 37
EagI CGGCCG 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 96
EclXI CGGCCG 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 579
Eco47I GGWCC 2 cut(s) 121, 332
Eco52I CGGCCG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 644
EcoRII CCWGG 3 cut(s) 123, 466, 478
EcoT14I CCWWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 1 cut(s) 64
FaiI YATR 9 cut(s) 62, 236, 330, 396, 438, 533, 538, 676, 717
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 2 cut(s) 154, 252
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 312, 315
FokI GGATG 2 cut(s) 269, 713
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 2 cut(s) 312, 315
GluI GCNGC 2 cut(s) 312, 315
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 3 cut(s) 39, 278, 686
HapII CCGG 1 cut(s) 487
Hin1II CATG 1 cut(s) 64
HincII GTYRAC 1 cut(s) 464
HindII GTYRAC 1 cut(s) 464
HinfI GANTC 4 cut(s) 116, 142, 214, 229
HpaII CCGG 1 cut(s) 487
HphI GGTGA 2 cut(s) 233, 554
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 20, 115
Hpy188III TCNNGA 3 cut(s) 410, 425, 662
Hpy8I GTNNAC 1 cut(s) 464
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 283, 691
HpyCH4III ACNGT 2 cut(s) 71, 421
HpyCH4IV ACGT 2 cut(s) 241, 502
HpyCH4V TGCA 3 cut(s) 74, 557, 691
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 1 cut(s) 667
HpySE526I ACGT 2 cut(s) 241, 502
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 4 cut(s) 3, 20, 33, 259
LmnI GCTCC 2 cut(s) 31, 127
Lsp1109I GCAGC 2 cut(s) 323, 326
LweI GCATC 1 cut(s) 709
MabI ACCWGGT 1 cut(s) 466
MaeII ACGT 2 cut(s) 241, 502
MaeIII GTNAC 2 cut(s) 196, 415
MalI GATC 4 cut(s) 5, 22, 35, 261
MbiI CCGCTC 1 cut(s) 26
MboI GATC 4 cut(s) 3, 20, 33, 259
MboII GAAGA 2 cut(s) 145, 665
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 3 cut(s) 477, 549, 579
MluCI AATT 3 cut(s) 183, 305, 656
MlyI GAGTC 2 cut(s) 136, 223
MnlI CCTC 6 cut(s) 131, 406, 417, 607, 631, 697
MroXI GAANNNNTTC 3 cut(s) 228, 293, 657
MseI TTAA 2 cut(s) 324, 609
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 4 cut(s) 125, 468, 480, 488
MvaI CCWGG 3 cut(s) 125, 468, 480
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 488
NdeII GATC 4 cut(s) 3, 20, 33, 259
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 2 cut(s) 476, 642
NmeAIII GCCGAG 1 cut(s) 65
NspV TTCGAA 1 cut(s) 297
PcsI WCGNNNNNNNCGW 2 cut(s) 151, 238
PdmI GAANNNNTTC 3 cut(s) 228, 293, 657
PfeI GAWTC 2 cut(s) 116, 229
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 2 cut(s) 313, 316
PleI GAGTC 2 cut(s) 136, 222
PpsI GAGTC 2 cut(s) 136, 222
Psp6I CCWGG 3 cut(s) 123, 466, 478
PspGI CCWGG 3 cut(s) 123, 466, 478
PspN4I GGNNCC 2 cut(s) 476, 642
PspPI GGNCC 4 cut(s) 121, 277, 332, 684
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 324, 609
SatI GCNGC 2 cut(s) 312, 315
Sau3AI GATC 4 cut(s) 3, 20, 33, 259
Sau96I GGNCC 4 cut(s) 121, 277, 332, 684
SchI GAGTC 2 cut(s) 136, 223
ScrFI CCNGG 4 cut(s) 125, 468, 480, 488
SduI GDGCHC 3 cut(s) 477, 549, 579
SetI ASST 6 cut(s) 244, 417, 437, 469, 505, 618
SexAI ACCWGGT 1 cut(s) 466
SfaNI GCATC 1 cut(s) 709
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 297
SinI GGWCC 2 cut(s) 121, 332
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 3 cut(s) 183, 305, 656
SsiI CCGC 5 cut(s) 10, 24, 81, 270, 348
StyD4I CCNGG 4 cut(s) 123, 466, 478, 486
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 71, 421
TaiI ACGT 2 cut(s) 244, 505
TaqI TCGA 1 cut(s) 297
TaqII GACCGA 1 cut(s) 109
TasI AATT 3 cut(s) 183, 305, 656
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 2 cut(s) 116, 229
Tru1I TTAA 2 cut(s) 324, 609
Tru9I TTAA 2 cut(s) 324, 609
TscAI CASTG 1 cut(s) 554
TseI GCWGC 2 cut(s) 311, 314
TspDTI ATGAA 3 cut(s) 149, 597, 726
TspRI CASTG 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 121, 332
XapI RAATTY 2 cut(s) 183, 656
XmnI GAANNNNTTC 3 cut(s) 228, 293, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.