Rh5BG098700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000181
Physical Location & Seq
Reverse (-)
8967274 .. 9061015
93742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG098700.1

Sequence Viewer

Length: 531 bp
ATGTCTCTGTGCGACGAAAACAACGTGATGGACCTCTCTGCTTTCCGATTGGCGGAGCAAGGCGCCTTCAACCCCAATGGTACCGAGTTTGTGCCTATCATCAGGCCATGTAAACCTGGAGCTTTAGATCGTGTGTCACTCCTCCGTCATATGGCAAACACTGGACCAAAGGGCACTCACAGTATGACAATCCCCGTTCAGACGCCACGCCCAGTCTGCCCTCCTGAAGGTAGATGTTTGATTTGTTCTTTGGATGAACATACTTCATCTGAATGCCCGTACAACGCTGAAGTCCCAAAGAACACAATTGTTGGCAAGGGCTGTGACGTATTTTGTAAGATTTGTGATTATTTATTTTTCGAGCGCTGTTGTAACCAAGATTCAGGGCGTGCGAAGCTCAAGTATTGCAATCTATGTTCGACCTACGGCGAACACTGGCACGTGCTGTGCTCGCGCAGATCTGGTGAATATGTGCTCAATCCTCCTGGTCACTTAACTAAATATGCTCGGAGGAACAAAAGTAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.63

Weight (kDa)

8.38

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 2 cut(s) 62, 80
AccII CGCG 1 cut(s) 454
AciI CCGC 1 cut(s) 53
AcuI CTGAAG 2 cut(s) 246, 309
AcvI CACGTG 1 cut(s) 442
AcyI GRCGYC 2 cut(s) 63, 203
AfaI GTAC 2 cut(s) 82, 281
AfeI AGCGCT 1 cut(s) 365
AfiI CCNNNNNNNGG 3 cut(s) 52, 151, 227
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 2 cut(s) 115, 484
AluBI AGCT 2 cut(s) 122, 397
AluI AGCT 2 cut(s) 122, 397
Alw21I GWGCWC 2 cut(s) 452, 477
Alw26I GTCTC 1 cut(s) 9
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 80
AspLEI GCGC 3 cut(s) 65, 366, 456
AspS9I GGNCC 2 cut(s) 31, 164
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 2 cut(s) 31, 164
BaeGI GKGCMC 1 cut(s) 176
BanI GGYRCC 2 cut(s) 62, 80
BbrPI CACGTG 1 cut(s) 442
Bbv12I GWGCWC 2 cut(s) 452, 477
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 2 cut(s) 117, 486
BcoDI GTCTC 1 cut(s) 9
BfoI RGCGCY 2 cut(s) 66, 367
BglII AGATCT 1 cut(s) 458
Bme1390I CCNGG 2 cut(s) 117, 486
Bme18I GGWCC 2 cut(s) 31, 164
BmgT120I GGNCC 2 cut(s) 31, 164
BmiI GGNNCC 2 cut(s) 64, 82
BmrFI CCNGG 2 cut(s) 117, 486
BmrI ACTGGG 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 383
BsaAI YACGTR 1 cut(s) 442
BsaHI GRCGYC 2 cut(s) 63, 203
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 151, 227
Bse1I ACTGG 3 cut(s) 166, 212, 440
BseBI CCWGG 2 cut(s) 117, 486
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 3 cut(s) 52, 151, 227
BseNI ACTGG 3 cut(s) 166, 212, 440
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 454
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 2 cut(s) 62, 80
BsiHKAI GWGCWC 2 cut(s) 452, 477
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 3 cut(s) 52, 151, 227
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 3 cut(s) 176, 452, 477
Bsp143I GATC 2 cut(s) 127, 458
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 106
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 64, 82
BspT107I GGYRCC 2 cut(s) 62, 80
BsrI ACTGG 3 cut(s) 166, 212, 440
BssMI GATC 2 cut(s) 127, 458
BssNI GRCGYC 2 cut(s) 63, 203
Bst2UI CCWGG 2 cut(s) 117, 486
Bst4CI ACNGT 1 cut(s) 182
BstACI GRCGYC 2 cut(s) 63, 203
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 390, 452
BstENI CCTNNNNNAGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 454
BstH2I RGCGCY 2 cut(s) 66, 367
BstHHI GCGC 3 cut(s) 65, 366, 456
BstKTI GATC 2 cut(s) 130, 461
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 127, 458
BstMWI GCNNNNNNNGC 3 cut(s) 216, 394, 451
BstNI CCWGG 2 cut(s) 117, 486
BstSCI CCNGG 2 cut(s) 115, 484
BstSLI GKGCMC 1 cut(s) 176
BstUI CGCG 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 159, 433
Cac8I GCNNGC 2 cut(s) 390, 452
CfoI GCGC 3 cut(s) 65, 366, 456
Cfr13I GGNCC 2 cut(s) 31, 164
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 81, 280
CviAII CATG 1 cut(s) 108
CviJI RGCY 4 cut(s) 106, 122, 321, 397
CviKI_1 RGCY 4 cut(s) 106, 122, 321, 397
CviQI GTAC 2 cut(s) 81, 280
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 129, 460
DpnII GATC 2 cut(s) 127, 458
EciI GGCGGA 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 31, 164
Eco47III AGCGCT 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 246, 309
Eco72I CACGTG 1 cut(s) 442
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 115, 484
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
FaeI CATG 1 cut(s) 111
FaiI YATR 8 cut(s) 109, 150, 152, 185, 261, 415, 471, 504
FaqI GGGAC 1 cut(s) 278
FatI CATG 1 cut(s) 107
FauNDI CATATG 1 cut(s) 150
FokI GGATG 1 cut(s) 266
GlaI GCGC 3 cut(s) 64, 365, 455
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 2 cut(s) 66, 367
HaeIII GGCC 1 cut(s) 106
HgaI GACGC 1 cut(s) 211
HhaI GCGC 3 cut(s) 65, 366, 456
Hin1I GRCGYC 2 cut(s) 63, 203
Hin1II CATG 1 cut(s) 111
Hin6I GCGC 3 cut(s) 63, 364, 454
HinP1I GCGC 3 cut(s) 63, 364, 454
HinfI GANTC 1 cut(s) 380
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 4 cut(s) 47, 201, 271, 510
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 76, 221
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 3 cut(s) 24, 327, 441
HpyCH4V TGCA 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 394, 451
HpySE526I ACGT 3 cut(s) 24, 327, 441
Hsp92I GRCGYC 2 cut(s) 63, 203
Hsp92II CATG 1 cut(s) 111
HspAI GCGC 3 cut(s) 63, 364, 454
KasI GGCGCC 1 cut(s) 62
KpnI GGTACC 1 cut(s) 84
Kzo9I GATC 2 cut(s) 127, 458
LmnI GCTCC 2 cut(s) 55, 119
MaeII ACGT 3 cut(s) 24, 327, 441
MaeIII GTNAC 4 cut(s) 135, 323, 371, 488
MalI GATC 2 cut(s) 129, 460
MboI GATC 2 cut(s) 127, 458
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 3 cut(s) 176, 452, 477
MluCI AATT 1 cut(s) 306
Mly113I GGCGCC 1 cut(s) 63
MnlI CCTC 5 cut(s) 44, 152, 231, 492, 504
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 271
MspR9I CCNGG 2 cut(s) 117, 486
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 2 cut(s) 117, 486
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 3 cut(s) 216, 394, 451
NarI GGCGCC 1 cut(s) 63
NdeI CATATG 1 cut(s) 150
NdeII GATC 2 cut(s) 127, 458
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 2 cut(s) 64, 82
NmuCI GTSAC 3 cut(s) 135, 323, 488
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 380
PluTI GGCGCC 1 cut(s) 66
PmaCI CACGTG 1 cut(s) 442
PmlI CACGTG 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 115, 484
PspCI CACGTG 1 cut(s) 442
PspGI CCWGG 2 cut(s) 115, 484
PspN4I GGNNCC 2 cut(s) 64, 82
PspPI GGNCC 2 cut(s) 31, 164
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 2 cut(s) 82, 281
RsaNI GTAC 2 cut(s) 81, 280
RseI CAYNNNNRTG 1 cut(s) 271
SaqAI TTAA 1 cut(s) 494
Sau3AI GATC 2 cut(s) 127, 458
Sau96I GGNCC 2 cut(s) 31, 164
ScrFI CCNGG 2 cut(s) 117, 486
SduI GDGCHC 3 cut(s) 176, 452, 477
SetI ASST 9 cut(s) 27, 36, 118, 124, 232, 330, 399, 425, 444
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 2 cut(s) 31, 164
SmiMI CAYNNNNRTG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 1 cut(s) 306
SsiI CCGC 1 cut(s) 53
SspDI GGCGCC 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 115, 484
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 3 cut(s) 27, 330, 444
TaqI TCGA 2 cut(s) 360, 419
TasI AATT 1 cut(s) 306
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 2 cut(s) 166, 440
TseFI GTSAC 3 cut(s) 135, 323, 488
Tsp45I GTSAC 3 cut(s) 135, 323, 488
TspDTI ATGAA 2 cut(s) 255, 270
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 2 cut(s) 166, 440
VpaK11BI GGWCC 2 cut(s) 31, 164
XagI CCTNNNNNAGG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.