Rh2DG509400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000181
Physical Location & Seq
Forward (+)
73375253 .. 73377111
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG509400.1

Sequence Viewer

Length: 582 bp
ATGTCTCTTGTCGAATCAGGATTCTCCAAGGATCCGAACCTGAACCAGGTCCCGCCGGAGGAGGACGACAAGATCCAGACTGATGGAAAGCACAAGTTTGCTGAAGACTCTCTATCTCAACTTGAAGTAGAGGAAGAAGAGGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGAAGGAGAAGGAGGAGAAGAAGAAGACGAAGCAGAAGAAGAATTTGAGATGTGTGATGTTTGTTTGAAGGACAAGGAACACTGGACAGATGAATGCCCGTACTTGGTTCGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGCTATGAGTTAGTTTGTGCGCACTGTAATGTGAAGGGTGGCCACTCTGATATAGTCGGTACACAATGTAATTGGTGGGGTGGCAACCCTAATAGGAGGTGGGAAGGACGTGCTATTATCAAGGTTTGTGGTATTTGTGAGGGCGTATTCCACTGGTCTGCAGAGTGCCCAAAGAAGGACTTATTACCAAAGCCAAAGAGTCTGTTGGAGTGTGCTGCTGAGTATCGCTCTTGGTTGGCTACCAAAAAATGTCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.9

Weight (kDa)

4.34

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
AciI CCGC 1 cut(s) 53
AclWI GGATC 3 cut(s) 26, 39, 67
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 275, 379
AfiI CCNNNNNNNGG 4 cut(s) 46, 58, 277, 493
AgsI TTSAA 2 cut(s) 125, 241
AjiI CACGTC 1 cut(s) 428
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 575
AluI AGCT 1 cut(s) 575
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 26, 39, 67
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 533, 575
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 49
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 488
BalI TGGCCA 1 cut(s) 360
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 2 cut(s) 111, 204
BbvI GCAGC 2 cut(s) 520, 562
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 477
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 2 cut(s) 534, 576
BlsI GCNGC 2 cut(s) 535, 577
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 33, 51
BmrFI CCNGG 1 cut(s) 47
BpiI GAAGAC 2 cut(s) 111, 204
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 58, 277, 493
Bse1I ACTGG 2 cut(s) 260, 476
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 4 cut(s) 46, 58, 277, 493
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 2 cut(s) 260, 476
BseRI GAGGAG 2 cut(s) 74, 201
BseSI GKGCMC 1 cut(s) 488
BseXI GCAGC 2 cut(s) 520, 562
BshFI GGCC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 4 cut(s) 46, 58, 277, 493
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 2 cut(s) 31, 72
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 33, 51
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 3 cut(s) 26, 39, 67
BsrI ACTGG 2 cut(s) 260, 476
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 31, 72
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 2 cut(s) 132, 141
BstDEI CTNAG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 34, 75
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 31, 72
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 520, 562
BstV2I GAAGAC 2 cut(s) 111, 204
BstX2I RGATCY 2 cut(s) 31, 72
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 2 cut(s) 31, 72
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 360
BtrI CACGTC 1 cut(s) 428
BtsIMutI CAGTG 3 cut(s) 253, 340, 469
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 49
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 2 cut(s) 274, 378
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviJI RGCY 5 cut(s) 321, 360, 511, 557, 575
CviKI_1 RGCY 5 cut(s) 321, 360, 511, 557, 575
CviQI GTAC 2 cut(s) 274, 378
DdeI CTNAG 1 cut(s) 537
DpnI GATC 2 cut(s) 33, 74
DpnII GATC 2 cut(s) 31, 72
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 132, 141
EarI CTCTTC 2 cut(s) 132, 141
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaiI YATR 2 cut(s) 324, 371
FalI AAGNNNNNCTT 4 cut(s) 294, 326, 482, 514
FaqI GGGAC 1 cut(s) 35
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 534, 576
Fsp4HI GCNGC 2 cut(s) 534, 576
FspAI RTGCGCAY 1 cut(s) 339
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 1 cut(s) 339
GluI GCNGC 2 cut(s) 534, 576
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 4 cut(s) 14, 21, 107, 517
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 2 cut(s) 36, 367
Hpy188III TCNNGA 2 cut(s) 18, 76
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 6 cut(s) 170, 176, 235, 346, 416, 487
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 427
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 31, 72
LpnPI CCDG 8 cut(s) 3, 32, 53, 59, 69, 89, 241, 457
Lsp1109I GCAGC 2 cut(s) 520, 562
MabI ACCWGGT 1 cut(s) 45
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 33, 74
MboI GATC 2 cut(s) 31, 72
MflI RGATCY 2 cut(s) 31, 72
MhlI GDGCHC 1 cut(s) 488
MlsI TGGCCA 1 cut(s) 360
MluCI AATT 2 cut(s) 215, 388
MluNI TGGCCA 1 cut(s) 360
MlyI GAGTC 2 cut(s) 101, 526
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 8 cut(s) 52, 55, 124, 133, 142, 179, 408, 451
Mox20I TGGCCA 1 cut(s) 360
MscI TGGCCA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 360
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 1 cut(s) 47
NdeII GATC 2 cut(s) 31, 72
NlaIV GGNNCC 2 cut(s) 33, 51
NsbI TGCGCA 1 cut(s) 339
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 14, 21
PkrI GCNGC 2 cut(s) 535, 577
PleI GAGTC 2 cut(s) 101, 525
PpsI GAGTC 2 cut(s) 101, 525
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 33, 51
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 2 cut(s) 31, 72
RsaI GTAC 2 cut(s) 275, 379
RsaNI GTAC 2 cut(s) 274, 378
RseI CAYNNNNRTG 1 cut(s) 345
SatI GCNGC 2 cut(s) 534, 576
Sau3AI GATC 2 cut(s) 31, 72
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 2 cut(s) 101, 526
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 488
SetI ASST 6 cut(s) 42, 51, 419, 430, 444, 577
SexAI ACCWGGT 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 2 cut(s) 215, 388
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 215, 388
TfiI GAWTC 2 cut(s) 14, 21
TscAI CASTG 3 cut(s) 260, 347, 476
TseI GCWGC 2 cut(s) 533, 575
TspDTI ATGAA 4 cut(s) 174, 180, 186, 279
TspRI CASTG 3 cut(s) 260, 347, 476
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.