RchiOBHm_Chr2g0151321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000181
Physical Location & Seq
Forward (+)
68973710 .. 68975112
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52053

Sequence Viewer

Length: 606 bp
ATGACTCTTGTCGAATCAGAATTCTCCAAGGATCCGAACCCGAACCCGAACCAGGTCCCGCCGGAGGCGGACGACAAGATCCAGACTGATGGAAAAAACAAAGCTGCTGAAGACTCTCTGTCTCAACTTGAAGTAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAGATGATGATGATGATGATGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTTGAGATGTGTGATGTTTGTTTGAAGGACAAGGAACACTGGACGGATGAATGCCCATACCTGGTTCGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGTTATTATATGGTTTGTGTGCACTGTAATCTGAGGGGTGGCCACTCTGATATAGTTGGTACACAATGTAAAGTGTGGGGTGACCACCCTGATAGGAGGTGGAAAGGACGTGCTATTGTCAAGGTCTGTGGTATTTGTGAGGGCGTACGCCACTGGTCTGCAGAGTGCCCAAAAAAGCACTTATTACAAAAGCAAAAGAGTCTGTTGGAGTGTGCTGCTGAATATCGGTCGTGGTTGGCTACCAAAAAATGTCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

23.19

Weight (kDa)

4.34

Isoelectric Point (pI)

72.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 68
AclWI GGATC 3 cut(s) 26, 39, 73
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 2 cut(s) 20, 239
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 2 cut(s) 403, 489
AfiI CCNNNNNNNGG 3 cut(s) 52, 64, 301
AgsI TTSAA 2 cut(s) 131, 265
AhdI GACNNNNNGTC 1 cut(s) 118
AjiI CACGTC 1 cut(s) 452
AjnI CCWGG 2 cut(s) 51, 300
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 2 cut(s) 104, 599
AluI AGCT 2 cut(s) 104, 599
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 126
Alw44I GTGCAC 1 cut(s) 362
AlwI GGATC 3 cut(s) 26, 39, 73
AoxI GGCC 1 cut(s) 382
ApaLI GTGCAC 1 cut(s) 362
ApeKI GCWGC 3 cut(s) 104, 557, 599
ApoI RAATTY 2 cut(s) 20, 239
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 2 cut(s) 366, 512
BalI TGGCCA 1 cut(s) 384
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 91, 544, 586
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 53, 302
BciVI GTATCC 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 320
BisI GCNGC 3 cut(s) 105, 558, 600
BlsI GCNGC 3 cut(s) 106, 559, 601
Bme1390I CCNGG 2 cut(s) 53, 302
Bme18I GGWCC 1 cut(s) 55
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 33, 57
BmrFI CCNGG 2 cut(s) 53, 302
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 64, 301
Bse1I ACTGG 2 cut(s) 284, 500
BseBI CCWGG 2 cut(s) 53, 302
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 3 cut(s) 52, 64, 301
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 2 cut(s) 284, 500
BseRI GAGGAG 4 cut(s) 152, 155, 164, 167
BseSI GKGCMC 2 cut(s) 366, 512
BseXI GCAGC 3 cut(s) 91, 544, 586
Bsh1285I CGRYCG 1 cut(s) 572
BshFI GGCC 1 cut(s) 384
BsiEI CGRYCG 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 62
BsiWI CGTACG 1 cut(s) 487
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 52, 64, 301
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 366, 512
Bsp143I GATC 2 cut(s) 31, 78
BspACI CCGC 2 cut(s) 59, 68
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 33, 57
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 3 cut(s) 26, 39, 73
BsrI ACTGG 2 cut(s) 284, 500
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 31, 78
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 53, 302
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 3 cut(s) 141, 153, 159
BstDEI CTNAG 1 cut(s) 374
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 2 cut(s) 34, 81
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 2 cut(s) 31, 78
BstMCI CGRYCG 1 cut(s) 572
BstNI CCWGG 2 cut(s) 53, 302
BstPAI GACNNNNGTC 1 cut(s) 8
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 51, 300
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 2 cut(s) 366, 512
BstV1I GCAGC 3 cut(s) 91, 544, 586
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 31, 78
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 2 cut(s) 31, 78
BsuI GTATCC 1 cut(s) 320
BsuRI GGCC 1 cut(s) 384
BtrI CACGTC 1 cut(s) 452
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 3 cut(s) 277, 364, 493
Cfr13I GGNCC 1 cut(s) 55
CsiI ACCWGGT 2 cut(s) 51, 300
Csp6I GTAC 2 cut(s) 402, 488
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviJI RGCY 4 cut(s) 104, 384, 581, 599
CviKI_1 RGCY 4 cut(s) 104, 384, 581, 599
CviQI GTAC 2 cut(s) 402, 488
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 33, 80
DpnII GATC 2 cut(s) 31, 78
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 3 cut(s) 141, 153, 159
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 3 cut(s) 141, 153, 159
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 51, 300
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaiI YATR 4 cut(s) 298, 351, 353, 395
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 1 cut(s) 41
FauI CCCGC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 105, 558, 600
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 3 cut(s) 105, 558, 600
GluI GCNGC 3 cut(s) 105, 558, 600
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 62
HinfI GANTC 4 cut(s) 4, 14, 113, 541
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 364, 404
Hpy188I TCNGA 4 cut(s) 19, 36, 375, 391
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 2 cut(s) 364, 404
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 2 cut(s) 364, 503
HpyF3I CTNAG 1 cut(s) 374
HpySE526I ACGT 1 cut(s) 451
Kzo9I GATC 2 cut(s) 31, 78
LpnPI CCDG 9 cut(s) 38, 65, 75, 95, 265, 287, 314, 444, 481
Lsp1109I GCAGC 3 cut(s) 91, 544, 586
MabI ACCWGGT 2 cut(s) 51, 300
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 2 cut(s) 328, 422
MalI GATC 2 cut(s) 33, 80
MboI GATC 2 cut(s) 31, 78
MflI RGATCY 2 cut(s) 31, 78
MhlI GDGCHC 2 cut(s) 366, 512
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 2 cut(s) 20, 239
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 2 cut(s) 107, 550
MmeI TCCRAC 1 cut(s) 528
Mox20I TGGCCA 1 cut(s) 384
MscI TGGCCA 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 384
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 53, 302
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 2 cut(s) 53, 302
NdeII GATC 2 cut(s) 31, 78
NlaIV GGNNCC 2 cut(s) 33, 57
NmuCI GTSAC 1 cut(s) 422
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 14
Pfl23II CGTACG 1 cut(s) 487
PkrI GCNGC 3 cut(s) 106, 559, 601
PleI GAGTC 2 cut(s) 107, 549
PpsI GAGTC 2 cut(s) 107, 549
PpuMI RGGWCCY 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 51, 300
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 51, 300
PspLI CGTACG 1 cut(s) 487
PspN4I GGNNCC 2 cut(s) 33, 57
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 2 cut(s) 31, 78
RsaI GTAC 2 cut(s) 403, 489
RsaNI GTAC 2 cut(s) 402, 488
SatI GCNGC 3 cut(s) 105, 558, 600
Sau3AI GATC 2 cut(s) 31, 78
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 107, 550
ScrFI CCNGG 2 cut(s) 53, 302
SduI GDGCHC 2 cut(s) 366, 512
SetI ASST 8 cut(s) 57, 106, 303, 346, 443, 454, 468, 601
SexAI ACCWGGT 2 cut(s) 51, 300
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 20, 239
SsiI CCGC 2 cut(s) 59, 68
StyD4I CCNGG 2 cut(s) 51, 300
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 454
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 558
TasI AATT 2 cut(s) 20, 239
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 3 cut(s) 284, 371, 500
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 3 cut(s) 104, 557, 599
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 210, 303
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 3 cut(s) 284, 371, 500
VneI GTGCAC 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 2 cut(s) 20, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.