Rroxscaffold_1G00042550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000181
Physical Location & Seq
Reverse (-)
60833208 .. 60834745
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042550.1

Sequence Viewer

Length: 705 bp
ATGTCTCTGGAGCCGCCCAACCTCAACCTCACAGATCAGGACGGCAAGATCCGCACTCATGCTGAAGGGGCTATCGTGCTGGAAATAGCTGACATAAAATTTGTGTTGTATAATTCTACATCTTGTGTGGCCGTTATACACGGTACCGACTCAAAAGACTCGAAGCTTGCTGGAATGTCTTTGACTCAACAATTTGGCTACTTGTCGCTGGCTCTGCCTCCCCTCTCCCTCATGGTTCTTTGGGATTTTGAAACATTTGCTTTTGGACTTGTGTTTTTAAATAATATTGTAAAAGAACAAGAAGAAGAATCAGCAAAGGAGGAGGAAGAAGAAGAAGAAGAAGCAGAAGGAGAAGGAGAAGGAGAACCAGAGGATGAAGATGAGGAAGAAGAATTTGACGTTTGTGATGTTTGCTTGAAGGACAAGGAACACTGGACATTTGATTGCCCGTACCTGGATCGCATCCCGATCCCGGAGGCGACAACTGTTGGCAGTGGCTATGCAATAGTTTGTAGAGGATGTCATGTATTGGGTGGCCATTCTGATAGGGACTGGGTAGGACGTGCCATTATGAAGTCTTGTAGTATTTGTGAGGAACCAGCTTCTCACTGGACTTACGAATGCCCGGACAACCCTGACCCGAGAAGGTATGACAATTCGAATAACCGTAAGGTGTTGATGCAAGAGGTCTACAGTGTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.29

Weight (kDa)

4.27

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 690
AciI CCGC 2 cut(s) 14, 52
AclWI GGATC 3 cut(s) 43, 463, 465
AcoI YGGCCR 2 cut(s) 129, 535
AcsI RAATTY 2 cut(s) 98, 392
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 2 cut(s) 145, 452
AfiI CCNNNNNNNGG 2 cut(s) 454, 472
AgsI TTSAA 2 cut(s) 251, 418
AjiI CACGTC 1 cut(s) 563
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 3 cut(s) 89, 166, 602
AluI AGCT 3 cut(s) 89, 166, 602
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 43, 463, 465
Ama87I CYCGRG 1 cut(s) 640
AoxI GGCC 2 cut(s) 129, 535
ApoI RAATTY 2 cut(s) 98, 392
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
Asp718I GGTACC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 473, 626
AsuII TTCGAA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 640
BalI TGGCCA 1 cut(s) 537
BanI GGYRCC 1 cut(s) 143
BceAI ACGGC 2 cut(s) 58, 116
BciT130I CCWGG 1 cut(s) 455
BcnI CCSGG 2 cut(s) 473, 626
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 691
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 455, 473, 626
BmeT110I CYCGRG 1 cut(s) 640
BmgBI CACGTC 1 cut(s) 563
BmiI GGNNCC 3 cut(s) 12, 145, 597
BmrFI CCNGG 3 cut(s) 455, 473, 626
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 2 cut(s) 471, 669
BmuI ACTGGG 1 cut(s) 562
BpmI CTGGAG 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 659
BpuMI CCSGG 2 cut(s) 473, 626
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 472
Bse1I ACTGG 3 cut(s) 437, 557, 614
BseBI CCWGG 1 cut(s) 455
BseGI GGATG 3 cut(s) 379, 462, 524
BseLI CCNNNNNNNGG 2 cut(s) 454, 472
BseNI ACTGG 3 cut(s) 437, 557, 614
BseRI GAGGAG 1 cut(s) 335
BshFI GGCC 2 cut(s) 131, 537
BshNI GGYRCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 640
BsiSI CCGG 2 cut(s) 473, 626
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 2 cut(s) 454, 472
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 563
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 2 cut(s) 131, 537
BsoBI CYCGRG 1 cut(s) 640
Bsp119I TTCGAA 1 cut(s) 659
Bsp143I GATC 4 cut(s) 34, 48, 457, 468
BspACI CCGC 2 cut(s) 14, 52
BspANI GGCC 2 cut(s) 131, 537
BspLI GGNNCC 3 cut(s) 12, 145, 597
BspPI GGATC 3 cut(s) 43, 463, 465
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 3 cut(s) 437, 557, 614
BssMI GATC 4 cut(s) 34, 48, 457, 468
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 4 cut(s) 143, 487, 668, 695
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 2 cut(s) 168, 210
BstF5I GGATG 3 cut(s) 379, 462, 524
BstKTI GATC 4 cut(s) 37, 51, 460, 471
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 34, 48, 457, 468
BstMWI GCNNNNNNNGC 3 cut(s) 51, 68, 214
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 453, 471, 624
BstSFI CTRYAG 1 cut(s) 691
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 2 cut(s) 131, 537
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 3 cut(s) 379, 462, 524
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 4 cut(s) 430, 499, 607, 700
Cac8I GCNNGC 2 cut(s) 168, 210
Csp6I GTAC 2 cut(s) 144, 451
CviAII CATG 4 cut(s) 59, 232, 524, 702
CviQI GTAC 2 cut(s) 144, 451
DpnI GATC 4 cut(s) 36, 50, 459, 470
DpnII GATC 4 cut(s) 34, 48, 457, 468
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 129, 535
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 453
FaeI CATG 4 cut(s) 62, 235, 527, 705
FaqI GGGAC 1 cut(s) 563
FatI CATG 4 cut(s) 58, 231, 523, 701
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 3 cut(s) 386, 449, 531
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 2 cut(s) 131, 537
HapII CCGG 2 cut(s) 473, 626
Hin1II CATG 4 cut(s) 62, 235, 527, 705
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 4 cut(s) 149, 158, 184, 308
HpaII CCGG 2 cut(s) 473, 626
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 3 cut(s) 8, 38, 466
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 6 cut(s) 59, 341, 347, 353, 412, 639
HpyCH4III ACNGT 4 cut(s) 143, 487, 668, 695
HpyCH4IV ACGT 2 cut(s) 399, 562
HpyCH4V TGCA 2 cut(s) 503, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 68, 214
HpySE526I ACGT 2 cut(s) 399, 562
Hsp92II CATG 4 cut(s) 62, 235, 527, 705
KpnI GGTACC 1 cut(s) 147
Kzo9I GATC 4 cut(s) 34, 48, 457, 468
LmnI GCTCC 1 cut(s) 10
LweI GCATC 2 cut(s) 471, 669
MaeII ACGT 2 cut(s) 399, 562
MalI GATC 4 cut(s) 36, 50, 459, 470
MboI GATC 4 cut(s) 34, 48, 457, 468
MflI RGATCY 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 5 cut(s) 98, 112, 191, 392, 655
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 3 cut(s) 143, 152, 178
Mox20I TGGCCA 1 cut(s) 537
MscI TGGCCA 1 cut(s) 537
MseI TTAA 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 537
MspI CCGG 2 cut(s) 473, 626
MspR9I CCNGG 3 cut(s) 455, 473, 626
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 3 cut(s) 51, 68, 214
NciI CCSGG 2 cut(s) 473, 626
NdeII GATC 4 cut(s) 34, 48, 457, 468
NlaIII CATG 4 cut(s) 62, 235, 527, 705
NlaIV GGNNCC 3 cut(s) 12, 145, 597
NspV TTCGAA 1 cut(s) 659
PctI GAATGC 1 cut(s) 626
PfeI GAWTC 1 cut(s) 308
PfoI TCCNGGA 1 cut(s) 471
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 3 cut(s) 143, 152, 178
PpsI GAGTC 3 cut(s) 143, 152, 178
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 12, 145, 597
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 2 cut(s) 145, 452
RsaNI GTAC 2 cut(s) 144, 451
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 4 cut(s) 34, 48, 457, 468
SchI GAGTC 3 cut(s) 143, 152, 178
ScrFI CCNGG 3 cut(s) 455, 473, 626
SfaNI GCATC 2 cut(s) 471, 669
SfcI CTRYAG 1 cut(s) 691
SfuI TTCGAA 1 cut(s) 659
Sse9I AATT 5 cut(s) 98, 112, 191, 392, 655
SsiI CCGC 2 cut(s) 14, 52
SspI AATATT 1 cut(s) 286
StyD4I CCNGG 3 cut(s) 453, 471, 624
TaaI ACNGT 4 cut(s) 143, 487, 668, 695
TaiI ACGT 2 cut(s) 402, 565
TaqI TCGA 2 cut(s) 161, 659
TasI AATT 5 cut(s) 98, 112, 191, 392, 655
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 4 cut(s) 437, 499, 614, 700
TspDTI ATGAA 2 cut(s) 390, 587
TspRI CASTG 4 cut(s) 437, 499, 614, 700
XapI RAATTY 2 cut(s) 98, 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.