Rroxscaffold_2G00096530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000181
Physical Location & Seq
Reverse (-)
17768850 .. 17774410
5561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096530.1

Sequence Viewer

Length: 525 bp
ATGGTTAAAAGATACTTTCGACTAACCGTTTCACTGCTATACGGAGAATCTTGCCGACCAAATGATACATTGGGTGGACTGCCACTGGAAATATATTCTGGAGGTTACTTTGGGCGAATATTACCTAAAGATTTTACTCTTTCATCCAGACCCAGAGTCCTAGACGACGCCATGTCTCTTGTCGAATCAGAAGTCTCCAAGGATCCGAACCCGAACCCGAACCAGGCCCCGCTGGAGGAGGACGACAAGATCCAGACTCATGGTTATTATATGGTTTGTGCGCACTGTAATGTGAGGGGTGGCCACTCTGATATAGTTGGTACACAATGTAATGTGTGGGGTGACCACCCTGATAGGAGGTGGAAAGGACGTGCTATTGTCAAGGTCTGTGGTATTTGTGAGGGCGTACGCCACTGGTCTGCAGAGTGCCCAAAAAAGCACTTATTACAAAAGCAAAAGAGTCTGTTGGAGTGTGCTGCTGAATATCGGTCGTGGTTGGCTACCAAAAAATGTCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.61

Weight (kDa)

8.56

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
AciI CCGC 1 cut(s) 230
AclWI GGATC 3 cut(s) 197, 210, 244
AcoI YGGCCR 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 2 cut(s) 322, 408
AfiI CCNNNNNNNGG 2 cut(s) 223, 235
AhdI GACNNNNNGTC 2 cut(s) 155, 172
AjiI CACGTC 1 cut(s) 371
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw26I GTCTC 2 cut(s) 180, 199
AlwI GGATC 3 cut(s) 197, 210, 244
AoxI GGCC 2 cut(s) 225, 301
ApeKI GCWGC 2 cut(s) 476, 518
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 303
BamHI GGATCC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 463, 505
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 180, 199
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 2 cut(s) 477, 519
BlsI GCNGC 2 cut(s) 478, 520
Bme1390I CCNGG 1 cut(s) 224
BmeRI GACNNNNNGTC 2 cut(s) 155, 172
BmgBI CACGTC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 204, 228
BmrFI CCNGG 1 cut(s) 224
BpmI CTGGAG 2 cut(s) 120, 254
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 235
Bse1I ACTGG 2 cut(s) 90, 419
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 223, 235
BseNI ACTGG 2 cut(s) 90, 419
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 2 cut(s) 463, 505
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 2 cut(s) 227, 303
BsiEI CGRYCG 1 cut(s) 491
BsiWI CGTACG 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 223, 235
BsmAI GTCTC 2 cut(s) 180, 199
BsnI GGCC 2 cut(s) 227, 303
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 202, 249
BspACI CCGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 227, 303
BspLI GGNNCC 2 cut(s) 204, 228
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 3 cut(s) 197, 210, 244
BsrI ACTGG 2 cut(s) 90, 419
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 202, 249
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 28, 287
BstACI GRCGYC 1 cut(s) 168
BstEII GGTNACC 1 cut(s) 341
BstF5I GGATG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 2 cut(s) 205, 252
BstMAI GTCTC 2 cut(s) 180, 199
BstMBI GATC 2 cut(s) 202, 249
BstMCI CGRYCG 1 cut(s) 491
BstNI CCWGG 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 463, 505
BstX2I RGATCY 2 cut(s) 202, 249
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 2 cut(s) 202, 249
BsuRI GGCC 2 cut(s) 227, 303
BtrI CACGTC 1 cut(s) 371
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 4 cut(s) 32, 83, 283, 412
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 321, 407
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 2 cut(s) 172, 260
CviJI RGCY 4 cut(s) 227, 303, 500, 518
CviKI_1 RGCY 4 cut(s) 227, 303, 500, 518
CviQI GTAC 2 cut(s) 321, 407
DpnI GATC 2 cut(s) 204, 251
DpnII GATC 2 cut(s) 202, 249
DriI GACNNNNNGTC 2 cut(s) 155, 172
EaeI YGGCCR 1 cut(s) 301
Eam1105I GACNNNNNGTC 2 cut(s) 155, 172
Eco130I CCWWGG 1 cut(s) 198
Eco91I GGTNACC 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 175, 263
FaiI YATR 7 cut(s) 40, 94, 173, 261, 270, 272, 314
FatI CATG 2 cut(s) 171, 259
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 477, 519
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 477, 519
FspAI RTGCGCAY 1 cut(s) 282
FspBI CTAG 1 cut(s) 161
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 1 cut(s) 282
GluI GCNGC 2 cut(s) 477, 519
GsuI CTGGAG 2 cut(s) 120, 254
HaeIII GGCC 2 cut(s) 227, 303
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 175, 263
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 5 cut(s) 47, 156, 185, 256, 460
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 77, 323
Hpy188I TCNGA 3 cut(s) 190, 207, 310
Hpy188III TCNNGA 3 cut(s) 99, 147, 253
Hpy8I GTNNAC 2 cut(s) 77, 323
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 28, 287
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 1 cut(s) 422
HpySE526I ACGT 1 cut(s) 370
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 175, 263
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 2 cut(s) 202, 249
Lsp1109I GCAGC 2 cut(s) 463, 505
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 2 cut(s) 104, 341
MalI GATC 2 cut(s) 204, 251
MboI GATC 2 cut(s) 202, 249
MflI RGATCY 2 cut(s) 202, 249
MhlI GDGCHC 1 cut(s) 431
MlsI TGGCCA 1 cut(s) 303
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 3 cut(s) 165, 250, 469
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 6 cut(s) 95, 229, 232, 288, 351, 394
Mox20I TGGCCA 1 cut(s) 303
MscI TGGCCA 1 cut(s) 303
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
NdeII GATC 2 cut(s) 202, 249
NlaIII CATG 2 cut(s) 175, 263
NlaIV GGNNCC 2 cut(s) 204, 228
NmuCI GTSAC 1 cut(s) 341
NsbI TGCGCA 1 cut(s) 282
PfeI GAWTC 2 cut(s) 47, 185
Pfl23II CGTACG 1 cut(s) 406
PkrI GCNGC 2 cut(s) 478, 520
PleI GAGTC 3 cut(s) 164, 250, 468
PpsI GAGTC 3 cut(s) 164, 250, 468
Psp6I CCWGG 1 cut(s) 222
PspEI GGTNACC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 222
PspLI CGTACG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 204, 228
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 424
PsuI RGATCY 2 cut(s) 202, 249
RsaI GTAC 2 cut(s) 322, 408
RsaNI GTAC 2 cut(s) 321, 407
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 2 cut(s) 477, 519
Sau3AI GATC 2 cut(s) 202, 249
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 3 cut(s) 165, 250, 469
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 431
SetI ASST 6 cut(s) 106, 127, 362, 373, 387, 520
SfcI CTRYAG 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 288
SsiI CCGC 1 cut(s) 230
SspI AATATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 28, 287
TaiI ACGT 1 cut(s) 373
TaqI TCGA 2 cut(s) 19, 183
TaqII GACCGA 1 cut(s) 477
TfiI GAWTC 2 cut(s) 47, 185
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 4 cut(s) 39, 90, 290, 419
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 476, 518
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 4 cut(s) 39, 90, 290, 419
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.