Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Reverse (-)

70377034 .. 70379586

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0519600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGAGGCTTCCAGCTTTACTCTCAAGCCATGGAGTCCTTGCATCTTCCTTTGCCTTCTCGCCTTCCAGACTCTCCTAGCTTCTTTTGCAGCAGCTGAAACTCACTACCATGAATTTGTTGTTGAAGCAAAGCCAGTGAAGAGGCTGTGCAGAACCCACACCATAATCACAGTCAATGGCCAATTCCCAGGACCAAATTTGGAAGTCAGAAATGGAGATTCTCTTGCTATCAAAGTTACAAACAGAGCAAAATACAATATCACTATCCACTGGCATGGAGTAAGGCAGCTAAGAAATCCATGGGCAGATGGACCTGAATATATCACACAGTGTCCCATCCAGCCAGGAGCCACTTACACTTACCGCTTCACAATTCAAGACCAAGAAGGCACTTTGTGGTGGCATGCACACAGCCAATGGCTTAGAGCCACTGTCTATGGAGCCCTCATTATCTATCCTAGATTGGGTTCTCCATACCCCTTCTCAATGCCCAAGAAAGAATTTCCCCTTCTTCTCGGTGAATGGTGGGATAGGAACCCACTAGATGTCCAGAGGCTGGCACAATTCACAGGAGGAGCACCCAATACCTCTGATGCATATACCATAAATGGTCAGCCTGGTGATCTCTATAGATGCTCCAAACAAGAAACTGTGAGAATTCCAGTGGAATCCGGCGAGACAATTCTCCTGAGAATCATCAACTCTGCACTCAATCAAGAACTGTTCTTCGCCATTGCCAACCATAGATTGACTGTTGTGAGTGCTGATGCAGCCTACACCAAACCTTTCGCAACCAGACTCATTATGATAGGACCTGGCCAAACTACAGATGTCCTCCTCACGGCTGATCAGCCCCCTGCTCACTACTATGCTGCTGCACGTGTCTATCAGACTGCTCAAAATGCACCCTTCGACAACACCACCACCACTGCCATCCTTGAATACAAGTCTGCTGCTGCTTGTGATTCAAAGAAAGGGAAATTTTCAGCACCAGTACTGCCATCATTACCGGCCTTCAATGACACAGCAACCGCAACTGCATATAATGTTCAGATAAAGAGCCCTTCCCGGGTCCAAATTCCTACGCAGATCGACAATAACCTATTTTTCGTTGTAGGTTTGGGACTAATTAACTGCACAGTTCCTAACAGCCCTCGGTGTCAAGGACCAAACAATACCCGCTTTACAGCTAGCATGAACAATGTTTCTTTTGTATTCCCAAGAACCACCTCCTTAATGCAAGCCTACTATAATGGTATACCTGGTGTCTTCACCACAGACTTTCCACCAGTTCCTCCAGTGCAATTTGATTATACTGGTAATGTGAGCCGGGGCCTATGGACACCTAGTCGTGGAACTAAGCTCTACAAGTTGAAGTACGGTTCTAGTGTACAAATTGTGTTGCAGGACACAAGTATTGTCACAACTGAGGATCATCCTATGCATCTTCATGGGTACCATTTCTATGTGGTTGGATCAGGATTTGGCAACTTCAACCCCAGAACAGATCCAGCCAAATTTAACCTCATTGACCCACCACAGAGGAACACCATTGGAACAAATCCAGGTGGATGGGTAGCTATTCGATTTGTGGCTGATAATCCAGGTGTCTGGCTGATGCACTGTCACTTGGATGCACATCTCGTCTTGGGTTTCGCAATGGCTTTTCTAGTAGAGAATGGAAATGGACCACTGCAGTCTGTCATACCACCCCCAGCAGATCTACCCCGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

578

Amino Acids

64.11

Weight (kDa)

8.67

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	41 - 154	3.8e-45	Multicopper oxidase
Cu-oxidase	PF00394	167 - 317	1.4e-43	Multicopper oxidase
Cu-oxidase_2	PF07731	427 - 561	9.8e-42	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1455
AccB1I	GGYRCC	1 cut(s)	1455
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	1258
AciI	CCGC	3 cut(s)	364, 1032, 1180
AclWI	GGATC	3 cut(s)	1440, 1483, 1502
AcoI	YGGCCR	2 cut(s)	178, 817
AcsI	RAATTY	7 cut(s)	113, 196, 500, 657, 980, 1077, 1517
AcvI	CACGTG	1 cut(s)	881
AdeI	CACNNNGTG	2 cut(s)	330, 396
AfaI	GTAC	4 cut(s)	996, 1379, 1392, 1457
AfiI	CCNNNNNNNGG	5 cut(s)	464, 556, 841, 1069, 1352
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	7 cut(s)	125, 377, 941, 969, 1018, 1375, 1495
AhdI	GACNNNNNGTC	1 cut(s)	1347
AjnI	CCWGG	7 cut(s)	187, 343, 616, 814, 1261, 1564, 1603
AluBI	AGCT	7 cut(s)	15, 80, 95, 289, 1190, 1363, 1580
AluI	AGCT	7 cut(s)	15, 80, 95, 289, 1190, 1363, 1580
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	3 cut(s)	1440, 1483, 1502
AlwNI	CAGNNNCTG	2 cut(s)	95, 556
Ama87I	CYCGRG	1 cut(s)	1068
AoxI	GGCC	4 cut(s)	178, 817, 1011, 1333
ApeKI	GCWGC	8 cut(s)	89, 92, 286, 770, 872, 875, 953, 956
ApoI	RAATTY	7 cut(s)	113, 196, 500, 657, 980, 1077, 1517
Asp718I	GGTACC	1 cut(s)	1455
AspS9I	GGNCC	7 cut(s)	191, 311, 812, 1072, 1166, 1333, 1688
AsuC2I	CCSGG	3 cut(s)	1069, 1070, 1331
AsuHPI	GGTGA	3 cut(s)	530, 632, 1264
AsuNHI	GCTAGC	1 cut(s)	1190
AvaI	CYCGRG	1 cut(s)	1068
AvaII	GGWCC	6 cut(s)	191, 311, 812, 1072, 1166, 1688
BalI	TGGCCA	2 cut(s)	180, 819
BanI	GGYRCC	1 cut(s)	1455
BanII	GRGCYC	2 cut(s)	445, 1064
BbrPI	CACGTG	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	1261
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	8 cut(s)	101, 104, 298, 782, 859, 862, 940, 943
BccI	CCATC	5 cut(s)	302, 344, 941, 1009, 1566
BceAI	ACGGC	1 cut(s)	858
BciT130I	CCWGG	7 cut(s)	189, 345, 618, 816, 1263, 1566, 1605
BclI	TGATCA	1 cut(s)	847
BcnI	CCSGG	3 cut(s)	1069, 1070, 1331
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	7 cut(s)	77, 459, 542, 1191, 1347, 1386, 1670
BfmI	CTRYAG	3 cut(s)	628, 825, 1694
BglII	AGATCT	1 cut(s)	1720
BisI	GCNGC	8 cut(s)	90, 93, 287, 771, 873, 876, 954, 957
BlsI	GCNGC	8 cut(s)	91, 94, 288, 772, 874, 877, 955, 958
BmcAI	AGTACT	1 cut(s)	996
Bme18I	GGWCC	6 cut(s)	191, 311, 812, 1072, 1166, 1688
BmeRI	GACNNNNNGTC	1 cut(s)	1347
BmeT110I	CYCGRG	1 cut(s)	1068
BmgT120I	GGNCC	7 cut(s)	191, 311, 812, 1072, 1166, 1333, 1688
BmiI	GGNNCC	6 cut(s)	349, 442, 536, 1073, 1334, 1457
BmsI	GCATC	7 cut(s)	51, 583, 623, 757, 1453, 1608, 1624
BmtI	GCTAGC	1 cut(s)	1194
BpiI	GAAGAC	1 cut(s)	1261
BpmI	CTGGAG	1 cut(s)	1281
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	3 cut(s)	1069, 1070, 1331
BsaAI	YACGTR	1 cut(s)	881
BsaBI	GATNNNNATC	1 cut(s)	1638
BsaJI	CCNNGG	6 cut(s)	29, 187, 299, 1068, 1154, 1330
Bsc4I	CCNNNNNNNGG	5 cut(s)	464, 556, 841, 1069, 1352
Bse118I	RCCGGY	1 cut(s)	1009
Bse1I	ACTGG	7 cut(s)	134, 275, 662, 992, 1289, 1298, 1321
Bse3DI	GCAATG	2 cut(s)	732, 1665
Bse8I	GATNNNNATC	1 cut(s)	1638
BseBI	CCWGG	7 cut(s)	189, 345, 618, 816, 1263, 1566, 1605
BseDI	CCNNGG	6 cut(s)	29, 187, 299, 1068, 1154, 1330
BseGI	GGATG	5 cut(s)	336, 933, 1435, 1577, 1639
BseJI	GATNNNNATC	1 cut(s)	1638
BseLI	CCNNNNNNNGG	5 cut(s)	464, 556, 841, 1069, 1352
BseMI	GCAATG	2 cut(s)	732, 1665
BseMII	CTCAG	2 cut(s)	680, 1419
BseNI	ACTGG	7 cut(s)	134, 275, 662, 992, 1289, 1298, 1321
BseRI	GAGGAG	2 cut(s)	588, 827
BseXI	GCAGC	8 cut(s)	101, 104, 298, 782, 859, 862, 940, 943
BseYI	CCCAGC	1 cut(s)	1714
BsgI	GTGCAG	4 cut(s)	169, 690, 861, 1120
BshFI	GGCC	4 cut(s)	180, 819, 1013, 1335
BshNI	GGYRCC	1 cut(s)	1455
BsiHKAI	GWGCWC	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	1068
BsiSI	CCGG	4 cut(s)	672, 1010, 1069, 1330
BslFI	GGGAC	2 cut(s)	318, 1137
BslI	CCNNNNNNNGG	5 cut(s)	464, 556, 841, 1069, 1352
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	2 cut(s)	318, 1137
BsnI	GGCC	4 cut(s)	180, 819, 1013, 1335
BsoBI	CYCGRG	1 cut(s)	1068
Bsp1286I	GDGCHC	3 cut(s)	445, 580, 1064
Bsp1407I	TGTACA	1 cut(s)	1390
Bsp143I	GATC	7 cut(s)	622, 847, 1089, 1432, 1475, 1507, 1720
Bsp19I	CCATGG	2 cut(s)	29, 299
BspACI	CCGC	3 cut(s)	364, 1032, 1180
BspANI	GGCC	4 cut(s)	180, 819, 1013, 1335
BspCNI	CTCAG	2 cut(s)	681, 1420
BspLI	GGNNCC	6 cut(s)	349, 442, 536, 1073, 1334, 1457
BspMAI	CTGCAG	1 cut(s)	1698
BspOI	GCTAGC	1 cut(s)	1194
BspPI	GGATC	3 cut(s)	1440, 1483, 1502
BspT107I	GGYRCC	1 cut(s)	1455
BsrDI	GCAATG	2 cut(s)	732, 1665
BsrFI	RCCGGY	1 cut(s)	1009
BsrGI	TGTACA	1 cut(s)	1390
BsrI	ACTGG	7 cut(s)	134, 275, 662, 992, 1289, 1298, 1321
BssAI	RCCGGY	1 cut(s)	1009
BssECI	CCNNGG	6 cut(s)	29, 187, 299, 1068, 1154, 1330
BssMI	GATC	7 cut(s)	622, 847, 1089, 1432, 1475, 1507, 1720
BssNAI	GTATAC	1 cut(s)	1259
BssT1I	CCWWGG	2 cut(s)	29, 299
Bst1107I	GTATAC	1 cut(s)	1259
Bst2UI	CCWGG	7 cut(s)	189, 345, 618, 816, 1263, 1566, 1605
Bst4CI	ACNGT	9 cut(s)	172, 330, 433, 652, 723, 754, 1141, 1382, 1625
Bst6I	CTCTTC	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	1390
BstBAI	YACGTR	1 cut(s)	881
BstC8I	GCNNGC	4 cut(s)	405, 558, 1192, 1242
BstDEI	CTNAG	5 cut(s)	290, 422, 689, 1359, 1428
BstDSI	CCRYGG	2 cut(s)	29, 299
BstF5I	GGATG	5 cut(s)	336, 933, 1435, 1577, 1639
BstKTI	GATC	7 cut(s)	625, 850, 1092, 1435, 1478, 1510, 1723
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	7 cut(s)	622, 847, 1089, 1432, 1475, 1507, 1720
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 770, 902
BstNI	CCWGG	7 cut(s)	189, 345, 618, 816, 1263, 1566, 1605
BstNSI	RCATGY	1 cut(s)	407
BstSFI	CTRYAG	3 cut(s)	628, 825, 1694
BstV1I	GCAGC	8 cut(s)	101, 104, 298, 782, 859, 862, 940, 943
BstV2I	GAAGAC	1 cut(s)	1261
BstX2I	RGATCY	2 cut(s)	1507, 1720
BstXI	CCANNNNNNTGG	3 cut(s)	275, 1572, 1611
BstYI	RGATCY	2 cut(s)	1507, 1720
BstZ17I	GTATAC	1 cut(s)	1259
BsuRI	GGCC	4 cut(s)	180, 819, 1013, 1335
BtgI	CCRYGG	2 cut(s)	29, 299
BtsCI	GGATG	5 cut(s)	336, 933, 1435, 1577, 1639
BtsI	GCAGTG	2 cut(s)	927, 1691
BtsIMutI	CAGTG	9 cut(s)	141, 268, 335, 429, 669, 927, 1305, 1621, 1691
Cac8I	GCNNGC	4 cut(s)	405, 558, 1192, 1242
CaiI	CAGNNNCTG	2 cut(s)	95, 556
Cfr10I	RCCGGY	1 cut(s)	1009
Cfr13I	GGNCC	7 cut(s)	191, 311, 812, 1072, 1166, 1333, 1688
Cfr9I	CCCGGG	1 cut(s)	1068
CsiI	ACCWGGT	1 cut(s)	1261
Csp6I	GTAC	4 cut(s)	995, 1378, 1391, 1456
CviAII	CATG	7 cut(s)	30, 110, 275, 300, 404, 1195, 1451
CviQI	GTAC	4 cut(s)	995, 1378, 1391, 1456
DdeI	CTNAG	5 cut(s)	290, 422, 689, 1359, 1428
DpnI	GATC	7 cut(s)	624, 849, 1091, 1434, 1477, 1509, 1722
DpnII	GATC	7 cut(s)	622, 847, 1089, 1432, 1475, 1507, 1720
DraIII	CACNNNGTG	2 cut(s)	330, 396
DriI	GACNNNNNGTC	1 cut(s)	1347
EaeI	YGGCCR	2 cut(s)	178, 817
Eam1104I	CTCTTC	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	1347
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	29, 299
Eco24I	GRGCYC	2 cut(s)	445, 1064
Eco47I	GGWCC	6 cut(s)	191, 311, 812, 1072, 1166, 1688
Eco72I	CACGTG	1 cut(s)	881
Eco88I	CYCGRG	1 cut(s)	1068
EcoO109I	RGGNCCY	2 cut(s)	812, 1333
EcoRI	GAATTC	1 cut(s)	657
EcoRII	CCWGG	7 cut(s)	187, 343, 616, 814, 1261, 1564, 1603
EcoT14I	CCWWGG	2 cut(s)	29, 299
EcoT22I	ATGCAT	2 cut(s)	598, 1446
EcoT38I	GRGCYC	2 cut(s)	445, 1064
ErhI	CCWWGG	2 cut(s)	29, 299
FaeI	CATG	7 cut(s)	33, 113, 278, 303, 407, 1198, 1454
FaqI	GGGAC	2 cut(s)	318, 1137
FatI	CATG	7 cut(s)	29, 109, 274, 299, 403, 1194, 1450
FauI	CCCGC	1 cut(s)	1187
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	1258
Fnu4HI	GCNGC	8 cut(s)	90, 93, 287, 771, 873, 876, 954, 957
FokI	GGATG	5 cut(s)	323, 920, 1422, 1584, 1646
FriOI	GRGCYC	2 cut(s)	445, 1064
Fsp4HI	GCNGC	8 cut(s)	90, 93, 287, 771, 873, 876, 954, 957
FspBI	CTAG	7 cut(s)	77, 459, 542, 1191, 1347, 1386, 1670
GluI	GCNGC	8 cut(s)	90, 93, 287, 771, 873, 876, 954, 957
GsaI	CCCAGC	1 cut(s)	1718
GsuI	CTGGAG	1 cut(s)	1281
HaeIII	GGCC	4 cut(s)	180, 819, 1013, 1335
HapII	CCGG	4 cut(s)	672, 1010, 1069, 1330
Hin1II	CATG	7 cut(s)	33, 113, 278, 303, 407, 1198, 1454
HinfI	GANTC	7 cut(s)	34, 70, 218, 668, 693, 798, 965
HpaII	CCGG	4 cut(s)	672, 1010, 1069, 1330
HphI	GGTGA	3 cut(s)	530, 632, 1264
Hpy166II	GTNNAC	2 cut(s)	1259, 1391
Hpy188I	TCNGA	4 cut(s)	209, 592, 891, 1053
Hpy188III	TCNNGA	6 cut(s)	67, 377, 550, 688, 716, 1479
Hpy8I	GTNNAC	2 cut(s)	1259, 1391
HpyAV	CCTTC	8 cut(s)	65, 73, 380, 490, 518, 919, 1024, 1074
HpyCH4III	ACNGT	9 cut(s)	172, 330, 433, 652, 723, 754, 1141, 1382, 1625
HpyCH4IV	ACGT	1 cut(s)	880
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 770, 902
HpyF3I	CTNAG	5 cut(s)	290, 422, 689, 1359, 1428
HpySE526I	ACGT	1 cut(s)	880
Hsp92II	CATG	7 cut(s)	33, 113, 278, 303, 407, 1198, 1454
KpnI	GGTACC	1 cut(s)	1459
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	7 cut(s)	622, 847, 1089, 1432, 1475, 1507, 1720
LmnI	GCTCC	4 cut(s)	347, 440, 575, 641
Lsp1109I	GCAGC	8 cut(s)	101, 104, 298, 782, 859, 862, 940, 943
LweI	GCATC	7 cut(s)	51, 583, 623, 757, 1453, 1608, 1624
MabI	ACCWGGT	1 cut(s)	1261
MaeI	CTAG	7 cut(s)	77, 459, 542, 1191, 1347, 1386, 1670
MaeII	ACGT	1 cut(s)	880
MaeIII	GTNAC	3 cut(s)	235, 1420, 1625
MalI	GATC	7 cut(s)	624, 849, 1091, 1434, 1477, 1509, 1722
MboI	GATC	7 cut(s)	622, 847, 1089, 1432, 1475, 1507, 1720
MboII	GAAGA	6 cut(s)	37, 151, 503, 718, 1261, 1439
MflI	RGATCY	2 cut(s)	1507, 1720
MhlI	GDGCHC	3 cut(s)	445, 580, 1064
MlsI	TGGCCA	2 cut(s)	180, 819
MluNI	TGGCCA	2 cut(s)	180, 819
MlyI	GAGTC	3 cut(s)	43, 64, 792
MmeI	TCCRAC	1 cut(s)	1453
Mox20I	TGGCCA	2 cut(s)	180, 819
Mph1103I	ATGCAT	2 cut(s)	598, 1446
MscI	TGGCCA	2 cut(s)	180, 819
MseI	TTAA	4 cut(s)	1131, 1235, 1521, 1735
MslI	CAYNNNNRTG	6 cut(s)	108, 273, 867, 1449, 1464, 1632
Msp20I	TGGCCA	2 cut(s)	180, 819
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	4 cut(s)	672, 1010, 1069, 1330
MvaI	CCWGG	7 cut(s)	189, 345, 618, 816, 1263, 1566, 1605
MwoI	GCNNNNNNNGC	3 cut(s)	86, 770, 902
NciI	CCSGG	3 cut(s)	1069, 1070, 1331
NcoI	CCATGG	2 cut(s)	29, 299
NdeII	GATC	7 cut(s)	622, 847, 1089, 1432, 1475, 1507, 1720
NheI	GCTAGC	1 cut(s)	1190
NlaIII	CATG	7 cut(s)	33, 113, 278, 303, 407, 1198, 1454
NlaIV	GGNNCC	6 cut(s)	349, 442, 536, 1073, 1334, 1457
NmuCI	GTSAC	2 cut(s)	1420, 1625
NsiI	ATGCAT	2 cut(s)	598, 1446
NspI	RCATGY	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	407
PfeI	GAWTC	4 cut(s)	218, 668, 693, 965
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	8 cut(s)	91, 94, 288, 772, 874, 877, 955, 958
PleI	GAGTC	3 cut(s)	42, 64, 792
PmaCI	CACGTG	1 cut(s)	881
PmlI	CACGTG	1 cut(s)	881
PpsI	GAGTC	3 cut(s)	42, 64, 792
Ppu21I	YACGTR	1 cut(s)	881
PpuMI	RGGWCCY	1 cut(s)	812
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	7 cut(s)	187, 343, 616, 814, 1261, 1564, 1603
PspCI	CACGTG	1 cut(s)	881
PspFI	CCCAGC	1 cut(s)	1714
PspGI	CCWGG	7 cut(s)	187, 343, 616, 814, 1261, 1564, 1603
PspN4I	GGNNCC	6 cut(s)	349, 442, 536, 1073, 1334, 1457
PspPI	GGNCC	7 cut(s)	191, 311, 812, 1072, 1166, 1333, 1688
PspPPI	RGGWCCY	1 cut(s)	812
PstI	CTGCAG	1 cut(s)	1698
PstNI	CAGNNNCTG	2 cut(s)	95, 556
PsuI	RGATCY	2 cut(s)	1507, 1720
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	4 cut(s)	996, 1379, 1392, 1457
RsaNI	GTAC	4 cut(s)	995, 1378, 1391, 1456
RseI	CAYNNNNRTG	6 cut(s)	108, 273, 867, 1449, 1464, 1632
SaqAI	TTAA	4 cut(s)	1131, 1235, 1521, 1735
SatI	GCNGC	8 cut(s)	90, 93, 287, 771, 873, 876, 954, 957
Sau3AI	GATC	7 cut(s)	622, 847, 1089, 1432, 1475, 1507, 1720
Sau96I	GGNCC	7 cut(s)	191, 311, 812, 1072, 1166, 1333, 1688
ScaI	AGTACT	1 cut(s)	996
SchI	GAGTC	3 cut(s)	43, 64, 792
SduI	GDGCHC	3 cut(s)	445, 580, 1064
SexAI	ACCWGGT	1 cut(s)	1261
SfaNI	GCATC	7 cut(s)	51, 583, 623, 757, 1453, 1608, 1624
SfcI	CTRYAG	3 cut(s)	628, 825, 1694
SinI	GGWCC	6 cut(s)	191, 311, 812, 1072, 1166, 1688
SmaI	CCCGGG	1 cut(s)	1070
SmiMI	CAYNNNNRTG	6 cut(s)	108, 273, 867, 1449, 1464, 1632
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	407
SsiI	CCGC	3 cut(s)	364, 1032, 1180
SspMI	CTAG	7 cut(s)	77, 459, 542, 1191, 1347, 1386, 1670
StyI	CCWWGG	2 cut(s)	29, 299
TaaI	ACNGT	9 cut(s)	172, 330, 433, 652, 723, 754, 1141, 1382, 1625
TaiI	ACGT	1 cut(s)	883
TaqI	TCGA	3 cut(s)	912, 1092, 1585
TatI	WGTACW	2 cut(s)	994, 1390
TfiI	GAWTC	4 cut(s)	218, 668, 693, 965
Tru1I	TTAA	4 cut(s)	1131, 1235, 1521, 1735
Tru9I	TTAA	4 cut(s)	1131, 1235, 1521, 1735
TscAI	CASTG	9 cut(s)	141, 275, 335, 436, 669, 934, 1305, 1628, 1698
TseFI	GTSAC	2 cut(s)	1420, 1625
TseI	GCWGC	8 cut(s)	89, 92, 286, 770, 872, 875, 953, 956
Tsp45I	GTSAC	2 cut(s)	1420, 1625
TspDTI	ATGAA	3 cut(s)	126, 1211, 1439
TspMI	CCCGGG	1 cut(s)	1068
TspRI	CASTG	9 cut(s)	141, 275, 335, 436, 669, 934, 1305, 1628, 1698
Van91I	CCANNNNNTGG	1 cut(s)	556
VpaK11BI	GGWCC	6 cut(s)	191, 311, 812, 1072, 1166, 1688
XapI	RAATTY	7 cut(s)	113, 196, 500, 657, 980, 1077, 1517
XceI	RCATGY	1 cut(s)	407
XmaI	CCCGGG	1 cut(s)	1068
XmiI	GTMKAC	1 cut(s)	1258
XspI	CTAG	7 cut(s)	77, 459, 542, 1191, 1347, 1386, 1670
ZrmI	AGTACT	1 cut(s)	996
Zsp2I	ATGCAT	2 cut(s)	598, 1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.