Prupe.4G159300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000181
Physical Location & Seq
Reverse (-)
9120208 .. 9122250
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G159300.1

Sequence Viewer

Length: 597 bp
ATGGACCTTGTCTCATCCTTGAAGTGCCAGAAATCGGATGCCCAGTCGGTGGAGATGGATAAGGACCGCATCCAAAAGGACTTTTTCTGGCCAGATATCCCCCGCATAAGCGATTTATCAATCCGTGGCAATTCGATTGTCATCATTAAGAAAGGTGGCGGAAAGGTCCCTTGCCCGCCAGAGATGGTCCCCCTTGATCGCGATAAGTCTCCACTTTTGAAACCCGGCTGCCCAGTCGGGAACAAAGGTGAAGAACCTGTTGAAGAAAAATTTGAACCTCCAAAGTCAAACTTCAGGGTGCCTACGTATCCTTTACGAAAATCAGAACCAAAGGCTGATCTTGATAGCACCTACATTCCTTTCATCCAGCACTCTCGTCCTATTGGTGAATGCAAATATTGTTTAAAGGTGGGTGAGCACATGACGCAACTATGCCCTTACCAGGACCGTGTCCCAAAGAATGCAATTCTCGGCAGTGGTTGTGATGTAGTTTGTAGAGTATGTGGTTGGTTCTTTAGAGGGTCCTGTTGTGGCCAAGATGAAGGACGTGCGGTTCTCAAGAATTGTATTTCTGTCAAGCGTTGTCTGAAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.15

Weight (kDa)

8.76

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 49
AccII CGCG 1 cut(s) 201
AciI CCGC 5 cut(s) 67, 103, 159, 176, 551
AcoI YGGCCR 2 cut(s) 89, 532
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 277
AfiI CCNNNNNNNGG 3 cut(s) 34, 49, 442
AgsI TTSAA 4 cut(s) 22, 220, 263, 275
AjiI CACGTC 1 cut(s) 548
AjnI CCWGG 1 cut(s) 441
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 2 cut(s) 16, 213
AoxI GGCC 2 cut(s) 89, 532
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 269
AspS9I GGNCC 6 cut(s) 4, 64, 166, 187, 445, 522
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 3 cut(s) 260, 398, 425
AvaII GGWCC 6 cut(s) 4, 64, 166, 187, 445, 522
BalI TGGCCA 2 cut(s) 91, 534
BanI GGYRCC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 215
BccI CCATC 2 cut(s) 49, 178
BciT130I CCWGG 1 cut(s) 443
BciVI GTATCC 1 cut(s) 318
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 16, 213
BfuI GTATCC 1 cut(s) 318
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 225, 443
Bme18I GGWCC 6 cut(s) 4, 64, 166, 187, 445, 522
BmgBI CACGTC 1 cut(s) 548
BmgT120I GGNCC 6 cut(s) 4, 64, 166, 187, 445, 522
BmiI GGNNCC 4 cut(s) 168, 189, 300, 523
BmrFI CCNGG 2 cut(s) 225, 443
BmrI ACTGGG 2 cut(s) 37, 227
BmsI GCATC 2 cut(s) 28, 78
BmuI ACTGGG 2 cut(s) 37, 227
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 49, 442
Bse1I ACTGG 2 cut(s) 43, 233
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 4 cut(s) 14, 43, 69, 363
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 3 cut(s) 34, 49, 442
BseNI ACTGG 2 cut(s) 43, 233
BseXI GCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 91, 534
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 3 cut(s) 152, 173, 437
BslI CCNNNNNNNGG 3 cut(s) 34, 49, 442
BsmAI GTCTC 2 cut(s) 16, 213
BsmFI GGGAC 3 cut(s) 152, 173, 437
BsmI GAATGC 2 cut(s) 395, 466
BsnI GGCC 2 cut(s) 91, 534
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 196, 337
Bsp68I TCGCGA 1 cut(s) 201
BspACI CCGC 5 cut(s) 67, 103, 159, 176, 551
BspANI GGCC 2 cut(s) 91, 534
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 4 cut(s) 168, 189, 300, 523
BspT107I GGYRCC 1 cut(s) 298
BsrI ACTGG 2 cut(s) 43, 233
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 196, 337
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 4 cut(s) 14, 43, 69, 363
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 2 cut(s) 199, 340
BstMAI GTCTC 2 cut(s) 16, 213
BstMBI GATC 2 cut(s) 196, 337
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 223, 441
BstSNI TACGTA 1 cut(s) 306
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 215
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 91, 534
BtgI CCRYGG 1 cut(s) 124
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 4 cut(s) 14, 43, 69, 363
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 1 cut(s) 481
BtuMI TCGCGA 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 176
Cfr13I GGNCC 6 cut(s) 4, 64, 166, 187, 445, 522
CseI GACGC 1 cut(s) 433
CviAII CATG 1 cut(s) 421
CviJI RGCY 4 cut(s) 91, 228, 335, 534
CviKI_1 RGCY 4 cut(s) 91, 228, 335, 534
DpnI GATC 2 cut(s) 198, 339
DpnII GATC 2 cut(s) 196, 337
DraI TTTAAA 1 cut(s) 405
EaeI YGGCCR 2 cut(s) 89, 532
EciI GGCGGA 1 cut(s) 174
Eco105I TACGTA 1 cut(s) 306
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 6 cut(s) 4, 64, 166, 187, 445, 522
Eco57I CTGAAG 1 cut(s) 277
EcoO109I RGGNCCY 2 cut(s) 166, 522
EcoRII CCWGG 1 cut(s) 441
EcoRV GATATC 1 cut(s) 97
FaeI CATG 1 cut(s) 424
FaiI YATR 4 cut(s) 107, 422, 433, 502
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 3 cut(s) 152, 173, 437
FatI CATG 1 cut(s) 420
FauI CCCGC 2 cut(s) 110, 183
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 3 cut(s) 50, 56, 350
Fsp4HI GCNGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 229
HaeIII GGCC 2 cut(s) 91, 534
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 433
Hin1II CATG 1 cut(s) 424
HpaII CCGG 1 cut(s) 225
HphI GGTGA 3 cut(s) 260, 398, 425
Hpy188I TCNGA 3 cut(s) 37, 325, 588
Hpy188III TCNNGA 4 cut(s) 200, 238, 341, 559
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4IV ACGT 2 cut(s) 305, 547
HpyCH4V TGCA 2 cut(s) 393, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpySE526I ACGT 2 cut(s) 305, 547
Hsp92II CATG 1 cut(s) 424
Kzo9I GATC 2 cut(s) 196, 337
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 2 cut(s) 28, 78
MaeII ACGT 2 cut(s) 305, 547
MalI GATC 2 cut(s) 198, 339
MboI GATC 2 cut(s) 196, 337
MboII GAAGA 2 cut(s) 263, 275
MhlI GDGCHC 1 cut(s) 420
MlsI TGGCCA 2 cut(s) 91, 534
MluCI AATT 4 cut(s) 130, 269, 465, 562
MluNI TGGCCA 2 cut(s) 91, 534
MnlI CCTC 2 cut(s) 288, 512
Mox20I TGGCCA 2 cut(s) 91, 534
MscI TGGCCA 2 cut(s) 91, 534
MseI TTAA 2 cut(s) 147, 404
Msp20I TGGCCA 2 cut(s) 91, 534
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 225, 443
Mva1269I GAATGC 2 cut(s) 395, 466
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 424
NciI CCSGG 1 cut(s) 225
NdeII GATC 2 cut(s) 196, 337
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 4 cut(s) 168, 189, 300, 523
NmeAIII GCCGAG 1 cut(s) 450
NruI TCGCGA 1 cut(s) 201
PctI GAATGC 2 cut(s) 395, 466
PflFI GACNNNGTC 2 cut(s) 8, 449
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 306
PpuMI RGGWCCY 2 cut(s) 166, 522
Psp5II RGGWCCY 2 cut(s) 166, 522
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 4 cut(s) 168, 189, 300, 523
PspPI GGNCC 6 cut(s) 4, 64, 166, 187, 445, 522
PspPPI RGGWCCY 2 cut(s) 166, 522
PsyI GACNNNGTC 2 cut(s) 8, 449
RruI TCGCGA 1 cut(s) 201
SaqAI TTAA 2 cut(s) 147, 404
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 2 cut(s) 196, 337
Sau96I GGNCC 6 cut(s) 4, 64, 166, 187, 445, 522
ScrFI CCNGG 2 cut(s) 225, 443
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 2 cut(s) 28, 78
SinI GGWCC 6 cut(s) 4, 64, 166, 187, 445, 522
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
SnaBI TACGTA 1 cut(s) 306
Sse9I AATT 4 cut(s) 130, 269, 465, 562
SsiI CCGC 5 cut(s) 67, 103, 159, 176, 551
SspI AATATT 1 cut(s) 398
StyD4I CCNGG 2 cut(s) 223, 441
TaaI ACNGT 1 cut(s) 449
TaiI ACGT 2 cut(s) 308, 550
TaqI TCGA 1 cut(s) 134
TasI AATT 4 cut(s) 130, 269, 465, 562
Tru1I TTAA 2 cut(s) 147, 404
Tru9I TTAA 2 cut(s) 147, 404
TscAI CASTG 1 cut(s) 481
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 2 cut(s) 352, 555
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 481
Tth111I GACNNNGTC 2 cut(s) 8, 449
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 6 cut(s) 4, 64, 166, 187, 445, 522
XapI RAATTY 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.