Rroxscaffold_2G00096660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000181
Physical Location & Seq
Reverse (-)
17992258 .. 17992739
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096660.1

Sequence Viewer

Length: 285 bp
ATGGAAGTAACTCTTGGCAAAGGTTATTATATGGTTTGTGTGGACTGTAATGTGTCGGGTGGCCACTCTGATATAGTCGGTACACAATGTAATGTGTGGGGTGGCCACCCTGATAGGAGGTGGAAAGGACGTGCTATTGTCAAGGTCTGCGGTATTTGTGCGGGCGTACGCCACTGGTCTGCGGAGTGCCCAAATAAGCACTTATTACAAAAGCAAAAGAGTCTGTTGGAGTGTGCTGCTGAATATCGGTCTTGGTTGGCTACCAAAAAATGTCAACCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.42

Weight (kDa)

9.0

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 150, 161, 182
AcoI YGGCCR 2 cut(s) 61, 103
AfaI GTAC 2 cut(s) 82, 168
AjiI CACGTC 1 cut(s) 131
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AoxI GGCC 2 cut(s) 61, 103
ApeKI GCWGC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 191
BalI TGGCCA 2 cut(s) 63, 105
BbvI GCAGC 1 cut(s) 223
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 1 cut(s) 223
BshFI GGCC 2 cut(s) 63, 105
BsiWI CGTACG 1 cut(s) 166
BsnI GGCC 2 cut(s) 63, 105
Bsp1286I GDGCHC 1 cut(s) 191
BspACI CCGC 3 cut(s) 150, 161, 182
BspANI GGCC 2 cut(s) 63, 105
BsrI ACTGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 223
BsuRI GGCC 2 cut(s) 63, 105
BtrI CACGTC 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 81, 167
CviJI RGCY 3 cut(s) 63, 105, 260
CviKI_1 RGCY 3 cut(s) 63, 105, 260
CviQI GTAC 2 cut(s) 81, 167
EaeI YGGCCR 2 cut(s) 61, 103
FaiI YATR 3 cut(s) 30, 32, 74
FalI AAGNNNNNCTT 1 cut(s) 29
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 237
HaeIII GGCC 2 cut(s) 63, 105
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HinfI GANTC 1 cut(s) 220
Hpy166II GTNNAC 3 cut(s) 43, 83, 275
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 3 cut(s) 43, 83, 275
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 130
LpnPI CCDG 2 cut(s) 123, 160
Lsp1109I GCAGC 1 cut(s) 223
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 191
MlsI TGGCCA 2 cut(s) 63, 105
MluNI TGGCCA 2 cut(s) 63, 105
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 1 cut(s) 111
Mox20I TGGCCA 2 cut(s) 63, 105
MscI TGGCCA 2 cut(s) 63, 105
Msp20I TGGCCA 2 cut(s) 63, 105
Pfl23II CGTACG 1 cut(s) 166
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PspLI CGTACG 1 cut(s) 166
RsaI GTAC 2 cut(s) 82, 168
RsaNI GTAC 2 cut(s) 81, 167
SatI GCNGC 1 cut(s) 237
SchI GAGTC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 191
SetI ASST 5 cut(s) 25, 122, 133, 147, 280
SgeI CNNG 8 cut(s) 26, 69, 122, 143, 154, 174, 187, 264
SsiI CCGC 3 cut(s) 150, 161, 182
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 133
TaqII GACCGA 1 cut(s) 237
TscAI CASTG 1 cut(s) 179
TseI GCWGC 1 cut(s) 236
TspRI CASTG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.