RchiOBHm_Chr6g0246131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000181
Physical Location & Seq
Forward (+)
1873947 .. 1874694
748 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22062

Sequence Viewer

Length: 189 bp
ATGGCTATGATTTATTTTGCGAGGGATGTCCTAGGTTGGGTGTCCATGCAGCTCACGGCTGGAAAGGACGTGCCCGTCAGGAAGAATTGTGGAGTTTGTCACGAGTATGGACTGTATGGTCAACGCTGGAGTTCAGAGTGCCCAAAATGTCCTAATCCAAAGCCATTTGGTCTTCTGCTACGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.02

Weight (kDa)

9.1

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 74, 117
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 37
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 49
AspA2I CCTAGG 1 cut(s) 31
AvrII CCTAGG 1 cut(s) 31
BaeGI GKGCMC 2 cut(s) 75, 143
BauI CACGAG 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 72
BfaI CTAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 50
BlnI CCTAGG 1 cut(s) 31
BlsI GCNGC 1 cut(s) 51
BmgBI CACGTC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 148
BsaAI YACGTR 2 cut(s) 182, 186
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 37
BseSI GKGCMC 2 cut(s) 75, 143
BseXI GCAGC 1 cut(s) 61
BsiWI CGTACG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 75, 143
BssECI CCNNGG 1 cut(s) 31
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 114
BstBAI YACGTR 2 cut(s) 182, 186
BstF5I GGATG 1 cut(s) 31
BstSLI GKGCMC 2 cut(s) 75, 143
BstSNI TACGTA 2 cut(s) 182, 186
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 164
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 31
Csp6I GTAC 1 cut(s) 183
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 5, 52, 59, 163
CviKI_1 RGCY 4 cut(s) 5, 52, 59, 163
CviQI GTAC 1 cut(s) 183
DrdI GACNNNNNNGTC 2 cut(s) 74, 117
DseDI GACNNNNNNGTC 2 cut(s) 74, 117
Eco105I TACGTA 2 cut(s) 182, 186
Eco130I CCWWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 8, 47, 108, 117
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 1 cut(s) 32
GluI GCNGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 148
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 79, 101
Hpy8I GTNNAC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4IV ACGT 3 cut(s) 69, 181, 185
HpyCH4V TGCA 1 cut(s) 49
HpySE526I ACGT 3 cut(s) 69, 181, 185
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 3 cut(s) 45, 64, 112
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 32
MaeII ACGT 3 cut(s) 69, 181, 185
MaeIII GTNAC 1 cut(s) 98
MboII GAAGA 2 cut(s) 94, 164
MhlI GDGCHC 2 cut(s) 75, 143
MluCI AATT 1 cut(s) 85
MnlI CCTC 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 105
NlaIII CATG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 98
Pfl23II CGTACG 1 cut(s) 182
PkrI GCNGC 1 cut(s) 51
Ppu21I YACGTR 2 cut(s) 182, 186
PspLI CGTACG 1 cut(s) 182
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 1 cut(s) 50
SduI GDGCHC 2 cut(s) 75, 143
SetI ASST 5 cut(s) 37, 54, 72, 184, 188
SmiMI CAYNNNNRTG 1 cut(s) 105
SnaBI TACGTA 2 cut(s) 182, 186
Sse9I AATT 1 cut(s) 85
SspMI CTAG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 114
TaiI ACGT 3 cut(s) 72, 184, 188
TasI AATT 1 cut(s) 85
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 31
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.