Rroxscaffold_7G00214760

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000181
Physical Location & Seq
Reverse (-)
65374672 .. 65377539
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214760.1

Sequence Viewer

Length: 549 bp
ATGCGGGATGTTGACTGTCATGGTTCGCTTACAGTGGAATCCTTCGGAGCTGTTCCTAGCACCGCTGGGTTTGTCCATGCAAGTACAAAGCCAATGCGGGATTACCACAAGATCGGGTCTCATGGTACCGCTGAGTTTGTTGAACTAGACTCGACTCCTCTCCGGAGATTTTGGCCCTCAGACATGCACCGGATAAGTAAAGCTGATCAAGAAGAAGACGATGACTCTTCGTCATCAGAAGACGAAGTATTTGGGCCCTGTGAGGTTTGTTTGAAGGATAATGCACACTGGAAGTTTGATTGCCCGTACCTGGTTTGTATCCCAAACGCCAAGGATGTAACTCTTGGCAATGGCTATGATTTATTTTGCAAGGGATGTCCTAGGTTGGGTGTCCATGCAGCTCACCACTGGAAAGGGCGTGCCGTCAGGAAGAAATGTGGAGTTTGTCACGAGTATGGTCAACACTGGAGTTCAGAGTGCCCAAAACGTCCTAATCCAAAGCCATTTGGTCTTCTGCTACGTAAGCTGACGGGAGAACGTGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.44

Weight (kDa)

6.4

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 4 cut(s) 4, 63, 97, 129
AfaI GTAC 3 cut(s) 85, 127, 308
AfiI CCNNNNNNNGG 2 cut(s) 310, 386
AgsI TTSAA 2 cut(s) 143, 274
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 4 cut(s) 50, 203, 401, 526
AluI AGCT 4 cut(s) 50, 203, 401, 526
Alw26I GTCTC 1 cut(s) 123
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 2 cut(s) 173, 254
ApaI GGGCCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp718I GGTACC 1 cut(s) 125
AspA2I CCTAGG 1 cut(s) 380
AspS9I GGNCC 3 cut(s) 174, 254, 255
AsuHPI GGTGA 1 cut(s) 395
AvrII CCTAGG 1 cut(s) 380
BaeGI GKGCMC 2 cut(s) 258, 482
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 3 cut(s) 222, 246, 503
BbvI GCAGC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 407
BciT130I CCWGG 1 cut(s) 311
BciVI GTATCC 1 cut(s) 329
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 3 cut(s) 57, 146, 381
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 1 cut(s) 399
BlnI CCTAGG 1 cut(s) 380
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 311
BmeRI GACNNNNNGTC 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 174, 254, 255
BmiI GGNNCC 2 cut(s) 127, 256
BmrFI CCNGG 1 cut(s) 311
BpiI GAAGAC 3 cut(s) 222, 246, 503
BpmI CTGGAG 1 cut(s) 487
BsaAI YACGTR 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 330, 380
BsaWI WCCGGW 2 cut(s) 162, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 386
Bse1I ACTGG 3 cut(s) 293, 413, 470
Bse3DI GCAATG 1 cut(s) 355
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 330, 380
BseGI GGATG 3 cut(s) 13, 340, 380
BseLI CCNNNNNNNGG 2 cut(s) 310, 386
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 123, 192
BseNI ACTGG 3 cut(s) 293, 413, 470
BseRI GAGGAG 1 cut(s) 147
BseSI GKGCMC 2 cut(s) 258, 482
BseXI GCAGC 1 cut(s) 410
BseYI CCCAGC 1 cut(s) 65
BshFI GGCC 2 cut(s) 175, 256
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 2 cut(s) 163, 190
BslI CCNNNNNNNGG 2 cut(s) 310, 386
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 2 cut(s) 175, 256
Bso31I GGTCTC 1 cut(s) 123
Bsp120I GGGCCC 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 258, 482
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 2 cut(s) 111, 205
BspACI CCGC 4 cut(s) 4, 63, 97, 129
BspANI GGCC 2 cut(s) 175, 256
BspCNI CTCAG 2 cut(s) 124, 191
BspEI TCCGGA 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 127, 256
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 3 cut(s) 293, 413, 470
BssECI CCNNGG 2 cut(s) 330, 380
BssMI GATC 2 cut(s) 111, 205
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 2 cut(s) 330, 380
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 17, 34
Bst6I CTCTTC 1 cut(s) 232
BstBAI YACGTR 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 2 cut(s) 132, 178
BstF5I GGATG 3 cut(s) 13, 340, 380
BstKTI GATC 2 cut(s) 114, 208
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 111, 205
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 309
BstSLI GKGCMC 2 cut(s) 258, 482
BstSNI TACGTA 1 cut(s) 521
BstV1I GCAGC 1 cut(s) 410
BstV2I GAAGAC 3 cut(s) 222, 246, 503
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 2 cut(s) 175, 256
BtsCI GGATG 3 cut(s) 13, 340, 380
BtsIMutI CAGTG 4 cut(s) 39, 286, 406, 463
Cac8I GCNNGC 1 cut(s) 420
Cfr13I GGNCC 3 cut(s) 174, 254, 255
CsiI ACCWGGT 1 cut(s) 309
Csp6I GTAC 3 cut(s) 84, 126, 307
CviAII CATG 5 cut(s) 20, 77, 122, 184, 395
CviJI RGCY 9 cut(s) 50, 91, 175, 203, 256, 354, 401, 502, 526
CviKI_1 RGCY 9 cut(s) 50, 91, 175, 203, 256, 354, 401, 502, 526
CviQI GTAC 3 cut(s) 84, 126, 307
DdeI CTNAG 2 cut(s) 132, 178
DpnI GATC 2 cut(s) 113, 207
DpnII GATC 2 cut(s) 111, 205
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 232
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 232
Eco105I TACGTA 1 cut(s) 521
Eco130I CCWWGG 2 cut(s) 330, 380
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 330, 380
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 2 cut(s) 330, 380
FaeI CATG 5 cut(s) 23, 80, 125, 187, 398
FaiI YATR 7 cut(s) 21, 78, 123, 185, 357, 396, 456
FatI CATG 5 cut(s) 19, 76, 121, 183, 394
FauI CCCGC 1 cut(s) 90
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 3 cut(s) 20, 347, 387
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 3 cut(s) 57, 146, 381
GluI GCNGC 1 cut(s) 399
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 487
HaeIII GGCC 2 cut(s) 175, 256
HapII CCGG 2 cut(s) 163, 190
Hin1II CATG 5 cut(s) 23, 80, 125, 187, 398
HincII GTYRAC 2 cut(s) 13, 461
HindII GTYRAC 2 cut(s) 13, 461
HinfI GANTC 4 cut(s) 38, 149, 154, 224
HpaII CCGG 2 cut(s) 163, 190
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 13, 461
Hpy188I TCNGA 4 cut(s) 47, 181, 238, 475
Hpy188III TCNNGA 4 cut(s) 163, 209, 427, 449
Hpy8I GTNNAC 2 cut(s) 13, 461
HpyAV CCTTC 2 cut(s) 52, 268
HpyCH4III ACNGT 2 cut(s) 17, 34
HpyCH4IV ACGT 3 cut(s) 487, 520, 538
HpyCH4V TGCA 5 cut(s) 80, 187, 284, 369, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpyF3I CTNAG 2 cut(s) 132, 178
HpySE526I ACGT 3 cut(s) 487, 520, 538
Hsp92II CATG 5 cut(s) 23, 80, 125, 187, 398
Kpn2I TCCGGA 1 cut(s) 162
KpnI GGTACC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 111, 205
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 410
MabI ACCWGGT 1 cut(s) 309
MaeI CTAG 3 cut(s) 57, 146, 381
MaeII ACGT 3 cut(s) 487, 520, 538
MaeIII GTNAC 2 cut(s) 337, 446
MalI GATC 2 cut(s) 113, 207
MboI GATC 2 cut(s) 111, 205
MboII GAAGA 6 cut(s) 219, 224, 227, 251, 442, 503
MhlI GDGCHC 2 cut(s) 258, 482
MlyI GAGTC 3 cut(s) 143, 148, 218
MnlI CCTC 4 cut(s) 168, 187, 256, 535
MroI TCCGGA 1 cut(s) 162
MseI TTAA 1 cut(s) 547
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 2 cut(s) 65, 131
MspI CCGG 2 cut(s) 163, 190
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 523
NdeII GATC 2 cut(s) 111, 205
NlaIII CATG 5 cut(s) 23, 80, 125, 187, 398
NlaIV GGNNCC 2 cut(s) 127, 256
NmuCI GTSAC 1 cut(s) 446
NspI RCATGY 1 cut(s) 187
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 3 cut(s) 143, 148, 218
PpsI GAGTC 3 cut(s) 143, 148, 218
Ppu21I YACGTR 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 127, 256
PspOMI GGGCCC 1 cut(s) 254
PspPI GGNCC 3 cut(s) 174, 254, 255
RsaI GTAC 3 cut(s) 85, 127, 308
RsaNI GTAC 3 cut(s) 84, 126, 307
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 547
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 111, 205
Sau96I GGNCC 3 cut(s) 174, 254, 255
SchI GAGTC 3 cut(s) 143, 148, 218
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 2 cut(s) 258, 482
SexAI ACCWGGT 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 453
SnaBI TACGTA 1 cut(s) 521
SsiI CCGC 4 cut(s) 4, 63, 97, 129
SspMI CTAG 3 cut(s) 57, 146, 381
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 330, 380
TaaI ACNGT 2 cut(s) 17, 34
TaiI ACGT 3 cut(s) 490, 523, 541
TaqI TCGA 1 cut(s) 152
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 547
Tru9I TTAA 1 cut(s) 547
TscAI CASTG 4 cut(s) 39, 293, 413, 470
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 446
TspRI CASTG 4 cut(s) 39, 293, 413, 470
XceI RCATGY 1 cut(s) 187
XmaJI CCTAGG 1 cut(s) 380
XspI CTAG 3 cut(s) 57, 146, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.