pycom05g00390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000181
Physical Location & Seq
Reverse (-)
460435 .. 462389
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00390.1

Sequence Viewer

Length: 717 bp
ATGATCCGCCGGACTTTCAGATCCGCTCCCGTGATCGGCGGCCGCGTTCAGGAATGCGTTGCCATGTTCCGCCGCGCAATCGGCGGAGAAGCAGAGGCCCACGCGAAAGCCAAGTCAGAATCGGCGCAGGGGCAGAACAGAGGAACTCGTAATCATCACAAGGCAATAGAACCAAAAACTCATGGAGATGTAACCAAAAAACCAGAGAGTCGTGGTGAAGTGATTCGTATGGGACGTGCCAGTCTTGTGGATGATCCTGTTTGCGGTGCGGCCCAAGGAAAGAAGGACTTCGAAGCAGAATTAGCAGCGGAAAAACTTACATGTGGTCCTTGTGGAATTTGCGGAAAGGAGAAAGACCACTGGCTTGATGAGTGCCCTTGCAAAGAACGTATCCCAAACCCTCTGGAGGTAACTGTTCTTGATGGTAGGTATGGAATGGTTTGCAAGTGTTGTGGTCGGCCTGGTGGGCATCCTGGTCGCCGGGGCTGGACTTGTGATGCTATTCTCAAGTTTTGTAGCCATTGTTTGGTATGGGGTGAGCACTGGACTGCAGATTGCCCGCGCATTGGGCCTGATGAAGTTGCGAAATGGAGAAAAGACATTAAAGAGGATGAATGTTATTGTTTGATACAGGAACCCGAGAAAGAATTTTTGGACTTAGAACCATATTTTAGGGCCGTGCAAAGGAAGGATGAGGAAAATGAATATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

6.71

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 240
AccB7I CCANNNNNTGG 1 cut(s) 526
AccBSI CCGCTC 1 cut(s) 26
AccII CGCG 4 cut(s) 45, 75, 104, 562
AclWI GGATC 2 cut(s) 15, 248
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 336, 647
AfiI CCNNNNNNNGG 7 cut(s) 35, 49, 263, 406, 526, 566, 684
AflIII ACRYGT 1 cut(s) 320
AjiI CACGTC 1 cut(s) 236
AjnI CCWGG 2 cut(s) 460, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
Alw21I GWGCWC 1 cut(s) 543
AlwI GGATC 2 cut(s) 15, 248
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 6 cut(s) 40, 96, 270, 458, 569, 675
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 2 cut(s) 336, 647
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 2 cut(s) 222, 287
AspLEI GCGC 3 cut(s) 77, 127, 564
AspS9I GGNCC 5 cut(s) 97, 271, 326, 569, 675
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 227, 548
AsuII TTCGAA 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 416
BceAI ACGGC 1 cut(s) 662
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 462, 474
BciVI GTATCC 1 cut(s) 401
BcnI CCSGG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 549
BfuI GTATCC 1 cut(s) 401
BglI GCCNNNNNGGC 1 cut(s) 466
BisI GCNGC 5 cut(s) 40, 43, 73, 270, 306
BlsI GCNGC 5 cut(s) 41, 44, 74, 271, 307
Bme1390I CCNGG 3 cut(s) 462, 474, 482
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 638
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 5 cut(s) 97, 271, 326, 569, 675
BmiI GGNNCC 1 cut(s) 636
BmrFI CCNGG 3 cut(s) 462, 474, 482
BmsI GCATC 3 cut(s) 478, 487, 700
BpmI CTGGAG 1 cut(s) 425
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 274, 481
Bsc4I CCNNNNNNNGG 7 cut(s) 35, 49, 263, 406, 526, 566, 684
Bse1I ACTGG 3 cut(s) 240, 365, 548
BseBI CCWGG 2 cut(s) 462, 474
BseDI CCNNGG 2 cut(s) 274, 481
BseGI GGATG 4 cut(s) 256, 469, 616, 697
BseLI CCNNNNNNNGG 7 cut(s) 35, 49, 263, 406, 526, 566, 684
BseNI ACTGG 3 cut(s) 240, 365, 548
BseSI GKGCMC 1 cut(s) 377
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 317
Bsh1236I CGCG 4 cut(s) 45, 75, 104, 562
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 6 cut(s) 42, 98, 272, 460, 571, 677
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 2 cut(s) 10, 481
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 7 cut(s) 35, 49, 263, 406, 526, 566, 684
BsmFI GGGAC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 6 cut(s) 42, 98, 272, 460, 571, 677
BsoBI CYCGRG 1 cut(s) 638
Bsp119I TTCGAA 1 cut(s) 291
Bsp1286I GDGCHC 2 cut(s) 377, 543
Bsp143I GATC 4 cut(s) 3, 20, 33, 253
BspANI GGCC 6 cut(s) 42, 98, 272, 460, 571, 677
BspFNI CGCG 4 cut(s) 45, 75, 104, 562
BspLI GGNNCC 1 cut(s) 636
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 2 cut(s) 15, 248
BspT104I TTCGAA 1 cut(s) 291
BsrBI CCGCTC 1 cut(s) 26
BsrI ACTGG 3 cut(s) 240, 365, 548
BssECI CCNNGG 2 cut(s) 274, 481
BssMI GATC 4 cut(s) 3, 20, 33, 253
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 462, 474
Bst4CI ACNGT 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 1 cut(s) 658
BstF5I GGATG 4 cut(s) 256, 469, 616, 697
BstFNI CGCG 4 cut(s) 45, 75, 104, 562
BstHHI GCGC 3 cut(s) 77, 127, 564
BstKTI GATC 4 cut(s) 6, 23, 36, 256
BstMBI GATC 4 cut(s) 3, 20, 33, 253
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 4 cut(s) 81, 302, 466, 568
BstNI CCWGG 2 cut(s) 462, 474
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 460, 472, 480
BstSFI CTRYAG 1 cut(s) 549
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 4 cut(s) 45, 75, 104, 562
BstV1I GCAGC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 20
BstZI CGGCCG 1 cut(s) 40
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 6 cut(s) 42, 98, 272, 460, 571, 677
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 4 cut(s) 256, 469, 616, 697
BtsIMutI CAGTG 2 cut(s) 358, 541
Cac8I GCNNGC 1 cut(s) 560
CciNI GCGGCCGC 1 cut(s) 40
CfoI GCGC 3 cut(s) 77, 127, 564
Cfr13I GGNCC 5 cut(s) 97, 271, 326, 569, 675
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 3 cut(s) 64, 182, 321
DdeI CTNAG 1 cut(s) 658
DpnI GATC 4 cut(s) 5, 22, 35, 255
DpnII GATC 4 cut(s) 3, 20, 33, 253
DrdI GACNNNNNNGTC 1 cut(s) 240
DseDI GACNNNNNNGTC 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
EciI GGCGGA 2 cut(s) 59, 99
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 326
Eco52I CGGCCG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 638
EcoRII CCWGG 2 cut(s) 460, 472
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 67, 185, 324
FaiI YATR 8 cut(s) 65, 183, 230, 322, 432, 532, 667, 708
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 1 cut(s) 246
FatI CATG 3 cut(s) 63, 181, 320
FauI CCCGC 1 cut(s) 567
Fnu4HI GCNGC 5 cut(s) 40, 43, 73, 270, 306
FokI GGATG 4 cut(s) 263, 456, 623, 704
Fsp4HI GCNGC 5 cut(s) 40, 43, 73, 270, 306
GlaI GCGC 3 cut(s) 76, 126, 563
GluI GCNGC 5 cut(s) 40, 43, 73, 270, 306
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 6 cut(s) 42, 98, 272, 460, 571, 677
HapII CCGG 2 cut(s) 10, 481
HhaI GCGC 3 cut(s) 77, 127, 564
Hin1II CATG 3 cut(s) 67, 185, 324
Hin6I GCGC 3 cut(s) 75, 125, 562
HinP1I GCGC 3 cut(s) 75, 125, 562
HinfI GANTC 3 cut(s) 119, 208, 223
HpaII CCGG 2 cut(s) 10, 481
HphI GGTGA 2 cut(s) 227, 548
Hpy188I TCNGA 2 cut(s) 20, 118
Hpy188III TCNNGA 3 cut(s) 50, 404, 419
HpyAV CCTTC 2 cut(s) 277, 682
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 2 cut(s) 235, 388
HpyCH4V TGCA 4 cut(s) 381, 444, 551, 682
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 302, 466, 568
HpyF3I CTNAG 1 cut(s) 658
HpySE526I ACGT 2 cut(s) 235, 388
Hsp92II CATG 3 cut(s) 67, 185, 324
HspAI GCGC 3 cut(s) 75, 125, 562
Kzo9I GATC 4 cut(s) 3, 20, 33, 253
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 3 cut(s) 478, 487, 700
MaeII ACGT 2 cut(s) 235, 388
MaeIII GTNAC 2 cut(s) 190, 409
MalI GATC 4 cut(s) 5, 22, 35, 255
MbiI CCGCTC 1 cut(s) 26
MboI GATC 4 cut(s) 3, 20, 33, 253
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 377, 543
MluCI AATT 3 cut(s) 299, 336, 647
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 6 cut(s) 88, 134, 400, 411, 601, 688
MroXI GAANNNNTTC 2 cut(s) 222, 287
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 10, 481
MspR9I CCNGG 3 cut(s) 462, 474, 482
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 2 cut(s) 462, 474
MvnI CGCG 4 cut(s) 45, 75, 104, 562
MwoI GCNNNNNNNGC 4 cut(s) 81, 302, 466, 568
NciI CCSGG 1 cut(s) 482
NdeII GATC 4 cut(s) 3, 20, 33, 253
NlaIII CATG 3 cut(s) 67, 185, 324
NlaIV GGNNCC 1 cut(s) 636
NotI GCGGCCGC 1 cut(s) 40
NspI RCATGY 1 cut(s) 324
NspV TTCGAA 1 cut(s) 291
PciI ACATGT 1 cut(s) 320
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 232
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 2 cut(s) 222, 287
PfeI GAWTC 2 cut(s) 119, 223
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 5 cut(s) 41, 44, 74, 271, 307
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PscI ACATGT 1 cut(s) 320
Psp6I CCWGG 2 cut(s) 460, 472
PspGI CCWGG 2 cut(s) 460, 472
PspN4I GGNNCC 1 cut(s) 636
PspPI GGNCC 5 cut(s) 97, 271, 326, 569, 675
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 5 cut(s) 40, 43, 73, 270, 306
Sau3AI GATC 4 cut(s) 3, 20, 33, 253
Sau96I GGNCC 5 cut(s) 97, 271, 326, 569, 675
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 3 cut(s) 462, 474, 482
SduI GDGCHC 2 cut(s) 377, 543
SetI ASST 4 cut(s) 238, 391, 411, 431
SfaNI GCATC 3 cut(s) 478, 487, 700
SfcI CTRYAG 1 cut(s) 549
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 3 cut(s) 299, 336, 647
StyD4I CCNGG 3 cut(s) 460, 472, 480
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 2 cut(s) 238, 391
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 299, 336, 647
TauI GCSGC 4 cut(s) 42, 45, 75, 272
TfiI GAWTC 2 cut(s) 119, 223
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 2 cut(s) 365, 548
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 591, 627, 717
TspRI CASTG 2 cut(s) 365, 548
Van91I CCANNNNNTGG 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 2 cut(s) 336, 647
XceI RCATGY 1 cut(s) 324
XmnI GAANNNNTTC 2 cut(s) 222, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.