Rh5BG113900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000181
Physical Location & Seq
Forward (+)
10662869 .. 10667383
4515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG113900.1

Sequence Viewer

Length: 666 bp
ATGCAGACTTGGGATTATATTTGGGCTTGGACCAAATTAGACACCGACCAAACGGGACTAACTATAAAAGCTCCCAGGTTGAGCAAATCCAGAAATCAAAGACCGAAGGAAGCCATGGCCCCCTGGTATATGGATCCAGCCAATACAATCAACCGCGACAAGTCTCATGGTAGCAAGGGCGGCAATGCCACAAGACTCAAGTGGAGATACCCACCCATAGATGGTACCTACAAGCTCTATGAAGGCTCCAATTATTTAGCCATAAATGTAGGAGTACCAAGGATCGTCACTTCTCTTCAGAAGTGCCCCAATAGTCCTGATAGCAATGGCAGCAAGGCCAACAGAAGCAAGTCTCCAGTGTTTACTATGGATGCTGTCACTTCTCTCCACAAGTGCCCCAGTAATCCTGGTAGCAAGGGTGGCAAGGCCAAAAGACTCAAGTGGACACACCTTGTGCAGGATTACAAAGGCCCCAGTTCTCCTGGCACAAAGGTGGAAGAACCAAGGATTGTCACTCCTCTCCAGAAGCGCCCCAGTAATCCTGGTATCAAGGGCGGCGTGGCCAAAAAACTCAAGTGGTCACACAGTGCTATGGATTATGAAGGCTCCAGTTCTCCTGGCACGAAGACGAAAGGACCAAATATCGGTACTCCACAAGCTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.27

Weight (kDa)

10.08

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AccII CGCG 1 cut(s) 156
AciI CCGC 3 cut(s) 154, 180, 555
AclWI GGATC 3 cut(s) 128, 141, 290
AcoI YGGCCR 1 cut(s) 561
AcuI CTGAAG 1 cut(s) 281
AdeI CACNNNGTG 2 cut(s) 454, 587
AfaI GTAC 3 cut(s) 226, 276, 649
AfiI CCNNNNNNNGG 3 cut(s) 221, 457, 644
AjnI CCWGG 6 cut(s) 74, 122, 406, 481, 541, 616
AleI CACNNNNGTG 1 cut(s) 491
AluBI AGCT 3 cut(s) 71, 235, 659
AluI AGCT 3 cut(s) 71, 235, 659
Alw26I GTCTC 2 cut(s) 168, 357
AlwI GGATC 3 cut(s) 128, 141, 290
AoxI GGCC 5 cut(s) 117, 336, 426, 469, 561
ApeKI GCWGC 1 cut(s) 330
Asp718I GGTACC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 4 cut(s) 30, 118, 470, 635
AvaII GGWCC 2 cut(s) 30, 635
BaeGI GKGCMC 2 cut(s) 308, 398
BalI TGGCCA 1 cut(s) 563
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 6 cut(s) 76, 124, 408, 483, 543, 618
BcoDI GTCTC 2 cut(s) 168, 357
BfoI RGCGCY 1 cut(s) 532
BisI GCNGC 3 cut(s) 181, 331, 556
BlsI GCNGC 3 cut(s) 182, 332, 557
Bme1390I CCNGG 6 cut(s) 76, 124, 408, 483, 543, 618
Bme18I GGWCC 2 cut(s) 30, 635
BmgT120I GGNCC 4 cut(s) 30, 118, 470, 635
BmiI GGNNCC 6 cut(s) 120, 135, 226, 247, 472, 607
BmrFI CCNGG 6 cut(s) 76, 124, 408, 483, 543, 618
BmrI ACTGGG 3 cut(s) 393, 468, 528
BmsI GCATC 1 cut(s) 361
BmuI ACTGGG 3 cut(s) 393, 468, 528
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 3 cut(s) 339, 506, 592
BpuEI CTTGAG 3 cut(s) 182, 422, 557
BsaJI CCNNGG 5 cut(s) 74, 114, 122, 278, 503
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 457, 644
Bse1I ACTGG 5 cut(s) 356, 399, 474, 534, 609
Bse3DI GCAATG 2 cut(s) 190, 331
BseBI CCWGG 6 cut(s) 76, 124, 408, 483, 543, 618
BseDI CCNNGG 5 cut(s) 74, 114, 122, 278, 503
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 3 cut(s) 221, 457, 644
BseMI GCAATG 2 cut(s) 190, 331
BseNI ACTGG 5 cut(s) 356, 399, 474, 534, 609
BseRI GAGGAG 1 cut(s) 507
BseSI GKGCMC 2 cut(s) 308, 398
BseXI GCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 5 cut(s) 119, 338, 428, 471, 563
BshNI GGYRCC 1 cut(s) 224
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 3 cut(s) 221, 457, 644
BsmAI GTCTC 2 cut(s) 168, 357
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 5 cut(s) 119, 338, 428, 471, 563
Bsp1286I GDGCHC 2 cut(s) 308, 398
Bsp143I GATC 2 cut(s) 133, 282
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 3 cut(s) 154, 180, 555
BspANI GGCC 5 cut(s) 119, 338, 428, 471, 563
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 6 cut(s) 120, 135, 226, 247, 472, 607
BspPI GGATC 3 cut(s) 128, 141, 290
BspT107I GGYRCC 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 190, 331
BsrI ACTGG 5 cut(s) 356, 399, 474, 534, 609
BssECI CCNNGG 5 cut(s) 74, 114, 122, 278, 503
BssMI GATC 2 cut(s) 133, 282
BssT1I CCWWGG 3 cut(s) 114, 278, 503
Bst2UI CCWGG 6 cut(s) 76, 124, 408, 483, 543, 618
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 114
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 2 cut(s) 136, 285
BstMAI GTCTC 2 cut(s) 168, 357
BstMBI GATC 2 cut(s) 133, 282
BstMWI GCNNNNNNNGC 3 cut(s) 180, 330, 420
BstNI CCWGG 6 cut(s) 76, 124, 408, 483, 543, 618
BstSCI CCNGG 6 cut(s) 74, 122, 406, 481, 541, 616
BstSLI GKGCMC 2 cut(s) 308, 398
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 5 cut(s) 119, 338, 428, 471, 563
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 363, 592
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 4 cut(s) 30, 118, 470, 635
Csp6I GTAC 3 cut(s) 225, 275, 648
CviAII CATG 2 cut(s) 115, 167
CviQI GTAC 3 cut(s) 225, 275, 648
DpnI GATC 2 cut(s) 135, 284
DpnII GATC 2 cut(s) 133, 282
DraIII CACNNNGTG 2 cut(s) 454, 587
EaeI YGGCCR 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 3 cut(s) 114, 278, 503
Eco47I GGWCC 2 cut(s) 30, 635
Eco57I CTGAAG 1 cut(s) 281
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 6 cut(s) 74, 122, 406, 481, 541, 616
EcoT14I CCWWGG 3 cut(s) 114, 278, 503
ErhI CCWWGG 3 cut(s) 114, 278, 503
FaeI CATG 2 cut(s) 118, 170
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 114, 166
Fnu4HI GCNGC 3 cut(s) 181, 331, 556
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 3 cut(s) 181, 331, 556
GlaI GCGC 1 cut(s) 530
GluI GCNGC 3 cut(s) 181, 331, 556
GsuI CTGGAG 3 cut(s) 339, 506, 592
HaeII RGCGCY 1 cut(s) 532
HaeIII GGCC 5 cut(s) 119, 338, 428, 471, 563
HhaI GCGC 1 cut(s) 531
Hin1II CATG 2 cut(s) 118, 170
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HinfI GANTC 2 cut(s) 195, 435
Hpy166II GTNNAC 2 cut(s) 363, 444
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 3 cut(s) 90, 317, 523
Hpy8I GTNNAC 2 cut(s) 363, 444
HpyAV CCTTC 3 cut(s) 100, 236, 596
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4V TGCA 2 cut(s) 4, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 330, 420
Hsp92II CATG 2 cut(s) 118, 170
HspAI GCGC 1 cut(s) 529
KpnI GGTACC 1 cut(s) 228
Kzo9I GATC 2 cut(s) 133, 282
LmnI GCTCC 4 cut(s) 76, 251, 611, 664
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 1 cut(s) 361
MaeIII GTNAC 4 cut(s) 286, 376, 511, 579
MalI GATC 2 cut(s) 135, 284
MboI GATC 2 cut(s) 133, 282
MboII GAAGA 3 cut(s) 287, 509, 637
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 308, 398
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 2 cut(s) 35, 250
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 2 cut(s) 189, 429
MnlI CCTC 1 cut(s) 528
Mox20I TGGCCA 1 cut(s) 563
MscI TGGCCA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 563
MspR9I CCNGG 6 cut(s) 76, 124, 408, 483, 543, 618
MvaI CCWGG 6 cut(s) 76, 124, 408, 483, 543, 618
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 180, 330, 420
NcoI CCATGG 1 cut(s) 114
NdeII GATC 2 cut(s) 133, 282
NlaIII CATG 2 cut(s) 118, 170
NlaIV GGNNCC 6 cut(s) 120, 135, 226, 247, 472, 607
NmuCI GTSAC 4 cut(s) 286, 376, 511, 579
OliI CACNNNNGTG 1 cut(s) 491
PkrI GCNGC 3 cut(s) 182, 332, 557
PleI GAGTC 2 cut(s) 189, 429
PpsI GAGTC 2 cut(s) 189, 429
Psp6I CCWGG 6 cut(s) 74, 122, 406, 481, 541, 616
PspGI CCWGG 6 cut(s) 74, 122, 406, 481, 541, 616
PspN4I GGNNCC 6 cut(s) 120, 135, 226, 247, 472, 607
PspPI GGNCC 4 cut(s) 30, 118, 470, 635
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 3 cut(s) 226, 276, 649
RsaNI GTAC 3 cut(s) 225, 275, 648
RseI CAYNNNNRTG 1 cut(s) 491
SatI GCNGC 3 cut(s) 181, 331, 556
Sau3AI GATC 2 cut(s) 133, 282
Sau96I GGNCC 4 cut(s) 30, 118, 470, 635
SchI GAGTC 2 cut(s) 189, 429
ScrFI CCNGG 6 cut(s) 76, 124, 408, 483, 543, 618
SduI GDGCHC 2 cut(s) 308, 398
SetI ASST 7 cut(s) 73, 80, 230, 237, 453, 495, 661
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 2 cut(s) 30, 635
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 3 cut(s) 197, 437, 572
SmoI CTYRAG 3 cut(s) 197, 437, 572
Sse9I AATT 2 cut(s) 35, 250
SsiI CCGC 3 cut(s) 154, 180, 555
StyD4I CCNGG 6 cut(s) 74, 122, 406, 481, 541, 616
StyI CCWWGG 3 cut(s) 114, 278, 503
TaaI ACNGT 1 cut(s) 587
TaqII GACCGA 1 cut(s) 118
TasI AATT 2 cut(s) 35, 250
TauI GCSGC 2 cut(s) 183, 558
TscAI CASTG 2 cut(s) 363, 592
TseFI GTSAC 4 cut(s) 286, 376, 511, 579
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 4 cut(s) 286, 376, 511, 579
TspDTI ATGAA 2 cut(s) 255, 615
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 2 cut(s) 363, 592
VpaK11BI GGWCC 2 cut(s) 30, 635
XagI CCTNNNNNAGG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.