Rw2G035660

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000181
Physical Location & Seq
Reverse (-)
58707777 .. 58709529
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035660.1

Sequence Viewer

Length: 330 bp
ATGTCACTGAACTATTGTATTTATTATACTTGTTCTCATCAATGTCTTTTCTTTCCTGTATTTGAATATAGTTTTGTTAGATTTCCTGAGTTGATTCCGTTATCTACACCATTTTTCACACTGCCGTACCTTTTCTTTGGTGTCCCGGAGGGCGCAACTCTTGGACCTGGGTATGCATTAACCTGCAAGGAATGTTATGAGGAGGGTGGCCACCCTGACAGACCCTGGGAAGCGCTCGCTGTTAGAAAGGTGTGCGACTTTTGCATGTGCCTTGCACATTGGACTGAAGAATGCCCATATCAGGTACCAGAGGGCGCTCGTGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.52

Weight (kDa)

4.84

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 2 cut(s) 128, 306
AfeI AGCGCT 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 2 cut(s) 166, 224
AlwNI CAGNNNCTG 1 cut(s) 225
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 1 cut(s) 208
Asp718I GGTACC 1 cut(s) 304
AspLEI GCGC 3 cut(s) 155, 235, 317
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 164
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BalI TGGCCA 1 cut(s) 210
BanI GGYRCC 1 cut(s) 304
BauI CACGAG 1 cut(s) 318
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 2 cut(s) 168, 226
BcnI CCSGG 1 cut(s) 146
BfoI RGCGCY 2 cut(s) 236, 318
BfuAI ACCTGC 1 cut(s) 191
Bme1390I CCNGG 3 cut(s) 146, 168, 226
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 3 cut(s) 146, 168, 226
BpuMI CCSGG 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 167, 224, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 301
BseBI CCWGG 2 cut(s) 168, 226
BseDI CCNNGG 3 cut(s) 167, 224, 225
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 215
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 210
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 306
BspMI ACCTGC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 167, 224, 225
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 168, 226
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 87
BstH2I RGCGCY 2 cut(s) 236, 318
BstHHI GCGC 3 cut(s) 155, 235, 317
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNI CCWGG 2 cut(s) 168, 226
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 144, 166, 224
BsuRI GGCC 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 2 cut(s) 5, 119
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 3 cut(s) 155, 235, 317
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 127, 305
CviAII CATG 1 cut(s) 265
CviJI RGCY 1 cut(s) 210
CviKI_1 RGCY 1 cut(s) 210
CviQI GTAC 2 cut(s) 127, 305
DdeI CTNAG 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 164
Eco47III AGCGCT 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 166, 224
EcoT22I ATGCAT 1 cut(s) 178
FaeI CATG 1 cut(s) 268
FaiI YATR 6 cut(s) 27, 69, 174, 198, 266, 298
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 264
GlaI GCGC 3 cut(s) 154, 234, 316
HaeII RGCGCY 2 cut(s) 236, 318
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 146
HhaI GCGC 3 cut(s) 155, 235, 317
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 3 cut(s) 153, 233, 315
HinP1I GCGC 3 cut(s) 153, 233, 315
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 176, 186, 264, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 3 cut(s) 153, 233, 315
KpnI GGTACC 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 1 cut(s) 299
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 1 cut(s) 325
MluNI TGGCCA 1 cut(s) 210
MnlI CCTC 4 cut(s) 142, 193, 196, 304
Mox20I TGGCCA 1 cut(s) 210
Mph1103I ATGCAT 1 cut(s) 178
MscI TGGCCA 1 cut(s) 210
MseI TTAA 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 210
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 3 cut(s) 146, 168, 226
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 2 cut(s) 168, 226
MwoI GCNNNNNNNGC 1 cut(s) 261
NciI CCSGG 1 cut(s) 146
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 268
PasI CCCWGGG 1 cut(s) 225
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 166, 224
PspGI CCWGG 2 cut(s) 166, 224
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 225
RsaI GTAC 2 cut(s) 128, 306
RsaNI GTAC 2 cut(s) 127, 305
SaqAI TTAA 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 146, 168, 226
SetI ASST 5 cut(s) 132, 169, 185, 252, 306
SinI GGWCC 1 cut(s) 164
Sse9I AATT 1 cut(s) 325
StyD4I CCNGG 3 cut(s) 144, 166, 224
TasI AATT 1 cut(s) 325
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 2 cut(s) 12, 126
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 2 cut(s) 12, 126
VpaK11BI GGWCC 1 cut(s) 164
XceI RCATGY 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.