RchiOBHm_Chr2g0151231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000181
Physical Location & Seq
Forward (+)
68889759 .. 68891354
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52045

Sequence Viewer

Length: 360 bp
ATGTGTGATGTTTGTTTGAAGGACAAGGAACACTGGACAGATGAATGCCCGTACTTGGTTCGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGCTATGAGTTAGTTTGTGCGCACTGTAACGTGAAGGGTGGCCACTCTGATATAGTCGGCACACAATGTAATTGGTGGGGGGGCAACCCTAATAGGAGGTGGGAAGGACGTGCTATTATCAAGGTTTGTGGTATTTGTGAGGGCGTACTCCACTGGTCTGCAGAGTGCCCAAACAAGGACTCATTACCAAAGCCAAAGAGTCTGTTGGAGTGTGCTGCTGAGTATCGCTCTTGGTTGGCTACCAAAAAATGTCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

7.49

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 136
AfaI GTAC 2 cut(s) 53, 243
AfiI CCNNNNNNNGG 2 cut(s) 55, 271
AgsI TTSAA 1 cut(s) 19
AjiI CACGTC 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 311, 353
AspLEI GCGC 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 138
BbvI GCAGC 2 cut(s) 298, 340
BciVI GTATCC 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 255
BfuI GTATCC 1 cut(s) 74
BisI GCNGC 2 cut(s) 312, 354
BlsI GCNGC 2 cut(s) 313, 355
BmgBI CACGTC 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 308, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 271
Bse1I ACTGG 2 cut(s) 38, 254
BseLI CCNNNNNNNGG 2 cut(s) 55, 271
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 38, 254
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 2 cut(s) 298, 340
BshFI GGCC 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 55, 271
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 266
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 38, 254
Bst4CI ACNGT 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 298, 340
BsuI GTATCC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 138
BtrI CACGTC 1 cut(s) 206
BtsIMutI CAGTG 3 cut(s) 31, 118, 247
CfoI GCGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 52, 242
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviJI RGCY 5 cut(s) 99, 138, 289, 335, 353
CviKI_1 RGCY 5 cut(s) 99, 138, 289, 335, 353
CviQI GTAC 2 cut(s) 52, 242
DdeI CTNAG 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 136
FaiI YATR 2 cut(s) 102, 149
FalI AAGNNNNNCTT 2 cut(s) 72, 104
Fnu4HI GCNGC 2 cut(s) 312, 354
Fsp4HI GCNGC 2 cut(s) 312, 354
FspAI RTGCGCAY 1 cut(s) 117
FspI TGCGCA 1 cut(s) 117
GlaI GCGC 1 cut(s) 117
GluI GCNGC 2 cut(s) 312, 354
HaeIII GGCC 1 cut(s) 138
HhaI GCGC 1 cut(s) 118
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 2 cut(s) 275, 295
Hpy188I TCNGA 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 13, 124, 194
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 2 cut(s) 126, 205
HpyCH4V TGCA 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 2 cut(s) 126, 205
HspAI GCGC 1 cut(s) 116
LpnPI CCDG 2 cut(s) 19, 235
Lsp1109I GCAGC 2 cut(s) 298, 340
MaeII ACGT 2 cut(s) 126, 205
MaeIII GTNAC 2 cut(s) 82, 122
MhlI GDGCHC 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 1 cut(s) 166
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 2 cut(s) 269, 304
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 2 cut(s) 186, 229
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 50
NsbI TGCGCA 1 cut(s) 117
PctI GAATGC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 313, 355
PleI GAGTC 2 cut(s) 269, 303
PpsI GAGTC 2 cut(s) 269, 303
PstI CTGCAG 1 cut(s) 259
RsaI GTAC 2 cut(s) 53, 243
RsaNI GTAC 2 cut(s) 52, 242
SatI GCNGC 2 cut(s) 312, 354
SchI GAGTC 2 cut(s) 269, 304
SduI GDGCHC 1 cut(s) 266
SetI ASST 5 cut(s) 129, 197, 208, 222, 355
SfcI CTRYAG 1 cut(s) 255
Sse9I AATT 1 cut(s) 166
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 2 cut(s) 129, 208
TasI AATT 1 cut(s) 166
TscAI CASTG 3 cut(s) 38, 125, 254
TseI GCWGC 2 cut(s) 311, 353
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 3 cut(s) 38, 125, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.