Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Forward (+)

83901063 .. 83902339

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG612800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGAAGCACTGTTTCTTTAGCAGAGTATTGCAAAGAGAAACAATCGATTCCGAACCAGGTCAGAAAGAATGGCTTCCGTTTACTATTTATCTCGCCAAGCAAACCCGTAGCTGGTATGATCATCCACTGGATATTACTTATGAAAAATCCCCGGGTGATGGTATATGCGGTTCGATCCTTTACTCCTATGCAGACCACAGACGGGGGTACACATCACTTATGGCTAGGTTACTTTCTAACCTTGGTGTCCCACAACAGGAGCACCCAACTATCCTTGATAAACTATTTGGGGTTGTCAGCTCGGCCGTCCCCAAGGGCCGCATTCTTGTCTTAATAGCCGACAAAGCTTGCCAACTTAAACAGGCCAGTCCTTGTGCCTTTCCTAATATGATGAATGATGTGGAGTACTTGAACCAGTCTCCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

143

Amino Acids

16.25

Weight (kDa)

6.41

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	171, 322
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	306
AfaI	GTAC	2 cut(s)	212, 410
AfiI	CCNNNNNNNGG	4 cut(s)	114, 161, 205, 259
AgsI	TTSAA	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	114, 303, 350
AluI	AGCT	3 cut(s)	114, 303, 350
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	3 cut(s)	306, 319, 366
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	2 cut(s)	155, 156
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	2 cut(s)	155, 156
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	60, 155, 156
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	319
BmrFI	CCNGG	3 cut(s)	60, 155, 156
BpuMI	CCSGG	2 cut(s)	155, 156
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	153, 154, 244, 315
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 161, 205, 259
Bse1I	ACTGG	3 cut(s)	135, 369, 418
BseBI	CCWGG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	4 cut(s)	153, 154, 244, 315
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	4 cut(s)	114, 161, 205, 259
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	3 cut(s)	135, 369, 418
BseX3I	CGGCCG	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	308, 321, 368
BshVI	ATCGAT	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	236, 296
BslI	CCNNNNNNNGG	4 cut(s)	114, 161, 205, 259
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	236, 296
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	3 cut(s)	308, 321, 368
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	121, 177
BspACI	CCGC	2 cut(s)	171, 322
BspANI	GGCC	3 cut(s)	308, 321, 368
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	48
BspPI	GGATC	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	135, 369, 418
BssECI	CCNNGG	4 cut(s)	153, 154, 244, 315
BssMI	GATC	2 cut(s)	121, 177
BssT1I	CCWWGG	2 cut(s)	244, 315
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	124, 180
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	121, 177
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	3 cut(s)	58, 153, 154
BstZI	CGGCCG	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	308, 321, 368
BsuTUI	ATCGAT	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	10, 128
Cac8I	GCNNGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	319
Cfr9I	CCCGGG	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	211, 409
CviJI	RGCY	9 cut(s)	76, 114, 227, 303, 308, 321, 341, 350, 368
CviKI_1	RGCY	9 cut(s)	76, 114, 227, 303, 308, 321, 341, 350, 368
CviQI	GTAC	2 cut(s)	211, 409
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	123, 179
DpnII	GATC	2 cut(s)	121, 177
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	244, 315
Eco52I	CGGCCG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	244, 315
ErhI	CCWWGG	2 cut(s)	244, 315
FaiI	YATR	7 cut(s)	120, 144, 167, 169, 192, 224, 392
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	2 cut(s)	236, 296
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	3 cut(s)	308, 321, 368
HapII	CCGG	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	84, 213
Hpy188I	TCNGA	2 cut(s)	55, 66
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	2 cut(s)	84, 213
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	34, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	121, 177
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	45, 72, 100, 116, 168, 245, 350, 382
MabI	ACCWGGT	1 cut(s)	58
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	123, 179
MboI	GATC	2 cut(s)	121, 177
MhlI	GDGCHC	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	2 cut(s)	335, 360
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	60, 155, 156
Mva1269I	GAATGC	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	2 cut(s)	155, 156
NdeII	GATC	2 cut(s)	121, 177
NmeAIII	GCCGAG	1 cut(s)	284
PctI	GAATGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	319
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
RsaI	GTAC	2 cut(s)	212, 410
RsaNI	GTAC	2 cut(s)	211, 409
SaqAI	TTAA	2 cut(s)	335, 360
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	2 cut(s)	121, 177
Sau96I	GGNCC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	60, 155, 156
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	6 cut(s)	64, 116, 233, 246, 305, 352
SexAI	ACCWGGT	1 cut(s)	58
SmaI	CCCGGG	1 cut(s)	156
SsiI	CCGC	2 cut(s)	171, 322
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	58, 153, 154
StyI	CCWWGG	2 cut(s)	244, 315
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	48, 176
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	335, 360
Tru9I	TTAA	2 cut(s)	335, 360
TscAI	CASTG	2 cut(s)	17, 135
TspDTI	ATGAA	2 cut(s)	159, 410
TspGWI	ACGGA	1 cut(s)	69
TspMI	CCCGGG	1 cut(s)	154
TspRI	CASTG	2 cut(s)	17, 135
XmaI	CCCGGG	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.