Rh2BG498100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000181
Physical Location & Seq
Forward (+)
70365416 .. 70373655
8240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG498100.1

Sequence Viewer

Length: 561 bp
ATGTCTCTTGTCGAATCAGAATTCTCCAAGGATCCGAACCAGAACCAGGTTCCGTCGGAGGAGGACGACAAGATCCAAACTCATGGAAAGCACAAGGTTGCTGAAGACTCTCTATCTCAACTTGAAGTAGAGGAAGAAGATGAAGATGAAGATGAAGATGCAGAAGGAGAAGAAGAAGAAGAAGCAGAAGAAGAATTTGAGATGTGTGATGTTTGTTTGAAGGACAAGAAACACTGGACAGATGAATGCCCGTACTTGGTTCGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGCTATGAGTTAGTTTGCGCGCACTGTAATGTGAAGGGTGGCCACTCTGATATAGTCGGTACACAATGTAATTGGTGGGGTGGCAACCGTAATAGGAGGTGGGAAGGACGTGCTATTATCAAGGTTTGTGGTATTTGTGAGGGCGTATTCCACTGGTCTGCAGAGTGCCCAAAGAAGGACTTATTACCAAAGCCAAAGAGTCTGTTGGAGTGTGCTGCTGAGTATCGCTCTTGGTTGGCTACCAAAAAATGCCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.19

Weight (kDa)

4.61

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 317
AclWI GGATC 3 cut(s) 26, 39, 67
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 2 cut(s) 20, 194
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 254, 358
AfiI CCNNNNNNNGG 3 cut(s) 46, 256, 472
AgsI TTSAA 2 cut(s) 125, 220
AjiI CACGTC 1 cut(s) 407
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 26, 39, 67
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 512, 554
ApoI RAATTY 2 cut(s) 20, 194
AspLEI GCGC 2 cut(s) 317, 319
BaeGI GKGCMC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 339
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 499, 541
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 456
BfuI GTATCC 1 cut(s) 275
BisI GCNGC 2 cut(s) 513, 555
BlsI GCNGC 2 cut(s) 514, 556
Bme1390I CCNGG 1 cut(s) 47
BmgBI CACGTC 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 33, 51
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 256, 472
Bse1I ACTGG 2 cut(s) 239, 455
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 46, 256, 472
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 239, 455
BsePI GCGCGC 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 2 cut(s) 499, 541
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 339
BslI CCNNNNNNNGG 3 cut(s) 46, 256, 472
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 2 cut(s) 31, 72
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 508
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 33, 51
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 3 cut(s) 26, 39, 67
BsrI ACTGG 2 cut(s) 239, 455
BssECI CCNNGG 1 cut(s) 27
BssHII GCGCGC 1 cut(s) 315
BssMI GATC 2 cut(s) 31, 72
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 323, 386
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 516
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 2 cut(s) 317, 319
BstKTI GATC 2 cut(s) 34, 75
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 31, 72
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 467
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 499, 541
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 31, 72
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 2 cut(s) 31, 72
BsuI GTATCC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 339
BtrI CACGTC 1 cut(s) 407
BtsIMutI CAGTG 3 cut(s) 232, 319, 448
Cac8I GCNNGC 1 cut(s) 317
CfoI GCGC 2 cut(s) 317, 319
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 2 cut(s) 253, 357
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 1 cut(s) 83
CviJI RGCY 5 cut(s) 300, 339, 490, 536, 554
CviKI_1 RGCY 5 cut(s) 300, 339, 490, 536, 554
CviQI GTAC 2 cut(s) 253, 357
DdeI CTNAG 1 cut(s) 516
DpnI GATC 2 cut(s) 33, 74
DpnII GATC 2 cut(s) 31, 72
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 86
FaiI YATR 3 cut(s) 84, 303, 350
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 461, 493
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 513, 555
Fsp4HI GCNGC 2 cut(s) 513, 555
GlaI GCGC 2 cut(s) 316, 318
GluI GCNGC 2 cut(s) 513, 555
HaeIII GGCC 1 cut(s) 339
HhaI GCGC 2 cut(s) 317, 319
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 2 cut(s) 315, 317
HinP1I GCGC 2 cut(s) 315, 317
HinfI GANTC 3 cut(s) 14, 107, 496
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 4 cut(s) 19, 36, 58, 346
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 5 cut(s) 158, 214, 325, 395, 466
HpyCH4III ACNGT 2 cut(s) 323, 386
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 2 cut(s) 161, 458
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 2 cut(s) 315, 317
Kzo9I GATC 2 cut(s) 31, 72
LpnPI CCDG 5 cut(s) 32, 53, 59, 220, 436
Lsp1109I GCAGC 2 cut(s) 499, 541
LweI GCATC 1 cut(s) 148
MabI ACCWGGT 1 cut(s) 45
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 33, 74
MboI GATC 2 cut(s) 31, 72
MflI RGATCY 2 cut(s) 31, 72
MhlI GDGCHC 1 cut(s) 467
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 3 cut(s) 20, 194, 367
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 2 cut(s) 101, 505
MmeI TCCRAC 2 cut(s) 36, 483
MnlI CCTC 5 cut(s) 52, 55, 124, 387, 430
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 317
NdeII GATC 2 cut(s) 31, 72
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 33, 51
PauI GCGCGC 1 cut(s) 315
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 2 cut(s) 514, 556
PleI GAGTC 2 cut(s) 101, 504
PpsI GAGTC 2 cut(s) 101, 504
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 33, 51
PstI CTGCAG 1 cut(s) 460
PsuI RGATCY 2 cut(s) 31, 72
PteI GCGCGC 1 cut(s) 315
RsaI GTAC 2 cut(s) 254, 358
RsaNI GTAC 2 cut(s) 253, 357
RseI CAYNNNNRTG 1 cut(s) 324
SatI GCNGC 2 cut(s) 513, 555
Sau3AI GATC 2 cut(s) 31, 72
SchI GAGTC 2 cut(s) 101, 505
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 467
SetI ASST 6 cut(s) 51, 99, 398, 409, 423, 556
SexAI ACCWGGT 1 cut(s) 45
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 456
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 3 cut(s) 20, 194, 367
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 323, 386
TaiI ACGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 20, 194, 367
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 3 cut(s) 239, 326, 455
TseI GCWGC 2 cut(s) 512, 554
TspDTI ATGAA 4 cut(s) 156, 162, 168, 258
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 3 cut(s) 239, 326, 455
XapI RAATTY 2 cut(s) 20, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.