RchiOBHm_Chr2g0170061

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000679
Physical Location & Seq
Forward (+)
84079233 .. 84084548
5316 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53762

Sequence Viewer

Length: 1326 bp
ATGGAAGTGCGTCGGAGTCCCAACTTCAATTTGGTAATTCACTCAAGTGAAAAGGATTTGAGCACTGTGAAACTTTTAAGTGAAAAAACTAAAAAGATTGCTGAGGTGGCTTATTCATTTGCCGTTAAAGGGCGCGTAGCTTCTCTGACTGCTCTACTCATCGTCGCCGCCAAGAAGGTTAACAATTCCGTCTTGGAATTGCGTGATTCCGACACAGGTCGCAAGGAGAAGGTAACCATCTACGAATGCCTTATAAGGGAGGCTTTGGCCCTGGGCTGCCGTACAAGGGAGAGCGAAAATTCAGAGAGAAGGAAGCTGTTGGTTTGCGAGATAGAGCTGCTTCAGCTCTTCGGAGTTGTAGCTCAGAGCAGCGGTGGTGGGGACAAGAAGGTGACTTCGCCACTTATCCTTGCAGCTCAGCGAGGAGATGGAGGTGTTATCCAGCTGCTTCTGAAGACAAATATACATGTCAACGATGCTGATGCAGATGGAAATTCTGCTCTTCATTGGATACTTGGGTTGTCGAGATTATCGTGTCCACTACAGATAAGAATTGTATTGCTTCTCATTGAGCATGGCGCCCTAGTAAGCCAAAGGAATAAATTGGGGTTGACAGCATTTCATATTGCTGCCGGTAATGGTAAAGCTGAGGCCCTTGAGTATTGGTCTTCAGAGCCTGCCTCATTAGTTGAAGGTTTGAACGCTAACATTTATTTTGTACATGAATTTATGGAATACTGTCCAAATGCCAGTACGCAAAGAGCTATAGACCTGGCAACCTCTCAAGAGATGCGTTACATATTGCAGAATCCAACCACTATTAGCCTTATTAATCATGCCTTCCCCTATCAGCTTAAATGTATGGCTTTAGAGTTGGCAGATGAAGAGACCACTACCAAAAGGCATACTCGTGCGTGTTTATATCTTTACTTTGTTCACGGTTCTCAAGTTGTTACCCCTGTGAATGCTAGAAATGTCAACTCAAGCACCAAGGCAGACGTTTGTAAGTACTTCAACCGTCATCAAGGATGTGTCAGAGGAGCAAAGTGCTTTAATTCACATTGTGAGGAGTCTCAGAAAGTGGAGGGAGAAGACAGGAATCATTCTTCTGCTGATAAACTACTCAAACGCAAAATCTTTGTTGGAAGACTTCCTCCTTCAGTGGACTCTGATGCTTTGAGAAAGCTCTGTGAAGAAGAGTTTGGATCAGTGGAAGATGCTGTAGTTATTGTAACTCAAATAGAAAACAAGATACAATCTCGAGGCTTTGGTCTTGTCACATACTCACATTTAGAGGGCAGAAATCTGCTTCAGAAGCCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

441

Amino Acids

48.9

Weight (kDa)

8.47

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 379 - 432 3.5e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 578
AccII CGCG 1 cut(s) 135
AciI CCGC 2 cut(s) 168, 372
AclWI GGATC 1 cut(s) 1213
AcsI RAATTY 3 cut(s) 298, 493, 725
AcuI CTGAAG 5 cut(s) 326, 473, 654, 1143, 1295
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 1064
AfaI GTAC 4 cut(s) 283, 720, 754, 1010
AfiI CCNNNNNNNGG 3 cut(s) 129, 256, 286
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 4 cut(s) 28, 692, 700, 1015
AjnI CCWGG 2 cut(s) 270, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 1185, 1217
AleI CACNNNNGTG 1 cut(s) 45
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 881, 1077
AlwI GGATC 1 cut(s) 1213
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 1260
AoxI GGCC 2 cut(s) 267, 651
ApeKI GCWGC 6 cut(s) 276, 337, 369, 413, 445, 629
ApoI RAATTY 3 cut(s) 298, 493, 725
AseI ATTAAT 1 cut(s) 831
AspLEI GCGC 2 cut(s) 135, 581
AspS9I GGNCC 2 cut(s) 268, 652
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 1260
BaeI ACNNNNGTAYC 2 cut(s) 503, 536
BanI GGYRCC 1 cut(s) 578
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 4 cut(s) 461, 660, 1098, 1153
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 2 cut(s) 102, 648
BbvI GCAGC 6 cut(s) 263, 324, 381, 425, 432, 616
BccI CCATC 3 cut(s) 245, 422, 482
BceAI ACGGC 2 cut(s) 107, 264
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 2 cut(s) 272, 773
BciVI GTATCC 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 881, 1077
BfaI CTAG 3 cut(s) 584, 969, 1324
BfmI CTRYAG 3 cut(s) 542, 765, 1221
BfoI RGCGCY 1 cut(s) 582
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 7 cut(s) 168, 277, 338, 370, 414, 446, 630
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 7 cut(s) 169, 278, 339, 371, 415, 447, 631
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 2 cut(s) 272, 773
BmeT110I CYCGRG 1 cut(s) 1260
BmgT120I GGNCC 2 cut(s) 268, 652
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 2 cut(s) 272, 773
BmsI GCATC 5 cut(s) 466, 472, 780, 1162, 1207
BoxI GACNNNNGTC 1 cut(s) 216
BpiI GAAGAC 4 cut(s) 461, 660, 1098, 1153
BplI GAGNNNNNCTC 2 cut(s) 665, 697
Bpu10I CCTNAGC 2 cut(s) 102, 648
Bpu1102I GCTNAGC 1 cut(s) 417
BpuEI CTTGAG 5 cut(s) 28, 677, 768, 930, 967
BsaHI GRCGYC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 270, 271, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 256, 286
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 1 cut(s) 750
BseBI CCWGG 2 cut(s) 272, 773
BseDI CCNNGG 3 cut(s) 270, 271, 990
BseGI GGATG 1 cut(s) 1034
BseLI CCNNNNNNNGG 3 cut(s) 129, 256, 286
BseMII CTCAG 5 cut(s) 93, 377, 431, 639, 1088
BseNI ACTGG 1 cut(s) 750
BseRI GAGGAG 3 cut(s) 438, 1053, 1082
BseXI GCAGC 6 cut(s) 263, 324, 381, 425, 432, 616
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 269, 653
BshNI GGYRCC 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 1260
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 2 cut(s) 3, 395
BslI CCNNNNNNNGG 3 cut(s) 129, 256, 286
BsmAI GTCTC 2 cut(s) 881, 1077
BsmFI GGGAC 2 cut(s) 3, 395
BsmI GAATGC 2 cut(s) 251, 970
BsnI GGCC 2 cut(s) 269, 653
Bso31I GGTCTC 1 cut(s) 881
BsoBI CYCGRG 1 cut(s) 1260
Bsp1286I GDGCHC 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 718
Bsp143I GATC 1 cut(s) 1205
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 2 cut(s) 168, 372
BspANI GGCC 2 cut(s) 269, 653
BspCNI CTCAG 5 cut(s) 94, 376, 430, 640, 1087
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 580
BspPI GGATC 1 cut(s) 1213
BspQI GCTCTTC 2 cut(s) 353, 507
BspT107I GGYRCC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 881
BsrFI RCCGGY 1 cut(s) 632
BsrGI TGTACA 1 cut(s) 718
BsrI ACTGG 1 cut(s) 750
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 3 cut(s) 270, 271, 990
BssMI GATC 1 cut(s) 1205
BssNI GRCGYC 1 cut(s) 579
BssSI CACGAG 1 cut(s) 909
BssT1I CCWWGG 1 cut(s) 990
Bst2BI CACGAG 1 cut(s) 909
Bst2UI CCWGG 2 cut(s) 272, 773
Bst4CI ACNGT 4 cut(s) 67, 740, 941, 1019
Bst6I CTCTTC 4 cut(s) 353, 507, 879, 1191
BstACI GRCGYC 1 cut(s) 579
BstAUI TGTACA 1 cut(s) 718
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 5 cut(s) 102, 363, 417, 648, 1074
BstEII GGTNACC 1 cut(s) 232
BstF5I GGATG 1 cut(s) 1034
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 135, 581
BstKTI GATC 1 cut(s) 1208
BstMAI GTCTC 2 cut(s) 881, 1077
BstMBI GATC 1 cut(s) 1205
BstMWI GCNNNNNNNGC 3 cut(s) 107, 343, 1315
BstNI CCWGG 2 cut(s) 272, 773
BstNSI RCATGY 1 cut(s) 470
BstPAI GACNNNNGTC 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 270, 771
BstSFI CTRYAG 3 cut(s) 542, 765, 1221
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 6 cut(s) 263, 324, 381, 425, 432, 616
BstV2I GAAGAC 4 cut(s) 461, 660, 1098, 1153
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 2 cut(s) 269, 653
BtsCI GGATG 1 cut(s) 1034
BtsIMutI CAGTG 3 cut(s) 63, 1167, 1215
Cac8I GCNNGC 1 cut(s) 678
CaiI CAGNNNCTG 1 cut(s) 677
CfoI GCGC 2 cut(s) 135, 581
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 2 cut(s) 268, 652
Csp6I GTAC 4 cut(s) 282, 719, 753, 1009
CviAII CATG 5 cut(s) 467, 575, 722, 836, 1320
CviQI GTAC 4 cut(s) 282, 719, 753, 1009
DdeI CTNAG 5 cut(s) 102, 363, 417, 648, 1074
DinI GGCGCC 1 cut(s) 580
DpnI GATC 1 cut(s) 1207
DpnII GATC 1 cut(s) 1205
DraIII CACNNNGTG 1 cut(s) 1064
Eam1104I CTCTTC 4 cut(s) 353, 507, 879, 1191
EarI CTCTTC 4 cut(s) 353, 507, 879, 1191
Eco130I CCWWGG 1 cut(s) 990
Eco31I GGTCTC 1 cut(s) 881
Eco57I CTGAAG 5 cut(s) 326, 473, 654, 1143, 1295
Eco88I CYCGRG 1 cut(s) 1260
Eco91I GGTNACC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 652
EcoO65I GGTNACC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 270, 771
EcoT14I CCWWGG 1 cut(s) 990
EgeI GGCGCC 1 cut(s) 580
EheI GGCGCC 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 990
FaeI CATG 5 cut(s) 470, 578, 725, 839, 1323
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 2 cut(s) 3, 395
FatI CATG 5 cut(s) 466, 574, 721, 835, 1319
Fnu4HI GCNGC 7 cut(s) 168, 277, 338, 370, 414, 446, 630
FokI GGATG 1 cut(s) 1041
Fsp4HI GCNGC 7 cut(s) 168, 277, 338, 370, 414, 446, 630
FspBI CTAG 3 cut(s) 584, 969, 1324
GlaI GCGC 2 cut(s) 134, 580
GluI GCNGC 7 cut(s) 168, 277, 338, 370, 414, 446, 630
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 2 cut(s) 269, 653
HapII CCGG 1 cut(s) 633
HhaI GCGC 2 cut(s) 135, 581
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 5 cut(s) 470, 578, 725, 839, 1323
Hin6I GCGC 2 cut(s) 133, 579
HinP1I GCGC 2 cut(s) 133, 579
HincII GTYRAC 4 cut(s) 181, 472, 612, 979
HindII GTYRAC 4 cut(s) 181, 472, 612, 979
HinfI GANTC 6 cut(s) 16, 206, 808, 1070, 1099, 1166
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 1 cut(s) 633
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 7 cut(s) 181, 472, 539, 612, 937, 979, 1165
Hpy188III TCNNGA 3 cut(s) 525, 785, 1260
Hpy8I GTNNAC 7 cut(s) 181, 472, 539, 612, 937, 979, 1165
Hpy99I CGWCG 2 cut(s) 15, 167
HpyAV CCTTC 7 cut(s) 169, 223, 303, 382, 686, 850, 1167
HpyCH4III ACNGT 4 cut(s) 67, 740, 941, 1019
HpyCH4IV ACGT 1 cut(s) 999
HpyCH4V TGCA 3 cut(s) 413, 485, 805
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 343, 1315
HpyF3I CTNAG 5 cut(s) 102, 363, 417, 648, 1074
HpySE526I ACGT 1 cut(s) 999
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 5 cut(s) 470, 578, 725, 839, 1323
HspAI GCGC 2 cut(s) 133, 579
KasI GGCGCC 1 cut(s) 578
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 1205
LguI GCTCTTC 2 cut(s) 353, 507
LmnI GCTCC 1 cut(s) 1040
Lsp1109I GCAGC 6 cut(s) 263, 324, 381, 425, 432, 616
LweI GCATC 5 cut(s) 466, 472, 780, 1162, 1207
MaeI CTAG 3 cut(s) 584, 969, 1324
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 6 cut(s) 232, 391, 794, 952, 1231, 1276
MalI GATC 1 cut(s) 1207
MboI GATC 1 cut(s) 1205
MhlI GDGCHC 1 cut(s) 65
Mly113I GGCGCC 1 cut(s) 579
MlyI GAGTC 3 cut(s) 25, 1079, 1160
MmeI TCCRAC 3 cut(s) 234, 836, 1123
MseI TTAA 6 cut(s) 77, 126, 180, 831, 855, 1053
MslI CAYNNNNRTG 2 cut(s) 45, 909
MspA1I CMGCKG 2 cut(s) 372, 445
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 2 cut(s) 272, 773
Mva1269I GAATGC 2 cut(s) 251, 970
MvaI CCWGG 2 cut(s) 272, 773
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 107, 343, 1315
NarI GGCGCC 1 cut(s) 579
NdeII GATC 1 cut(s) 1205
NlaIII CATG 5 cut(s) 470, 578, 725, 839, 1323
NlaIV GGNNCC 1 cut(s) 580
NmuCI GTSAC 2 cut(s) 391, 1276
NspI RCATGY 1 cut(s) 470
OliI CACNNNNGTG 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 1260
PasI CCCWGGG 1 cut(s) 271
PciI ACATGT 1 cut(s) 466
PciSI GCTCTTC 2 cut(s) 353, 507
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PctI GAATGC 2 cut(s) 251, 970
PfeI GAWTC 3 cut(s) 206, 808, 1099
PkrI GCNGC 7 cut(s) 169, 278, 339, 371, 415, 447, 631
PleI GAGTC 3 cut(s) 24, 1078, 1160
PluTI GGCGCC 1 cut(s) 582
PpsI GAGTC 3 cut(s) 24, 1078, 1160
PscI ACATGT 1 cut(s) 466
PshAI GACNNNNGTC 1 cut(s) 216
PshBI ATTAAT 1 cut(s) 831
PsiI TTATAA 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 270, 771
PspEI GGTNACC 1 cut(s) 232
PspGI CCWGG 2 cut(s) 270, 771
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 2 cut(s) 268, 652
PstNI CAGNNNCTG 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 4 cut(s) 283, 720, 754, 1010
RsaNI GTAC 4 cut(s) 282, 719, 753, 1009
RseI CAYNNNNRTG 2 cut(s) 45, 909
SapI GCTCTTC 2 cut(s) 353, 507
SaqAI TTAA 6 cut(s) 77, 126, 180, 831, 855, 1053
SatI GCNGC 7 cut(s) 168, 277, 338, 370, 414, 446, 630
Sau3AI GATC 1 cut(s) 1205
Sau96I GGNCC 2 cut(s) 268, 652
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 3 cut(s) 25, 1079, 1160
ScrFI CCNGG 2 cut(s) 272, 773
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 5 cut(s) 466, 472, 780, 1162, 1207
SfcI CTRYAG 3 cut(s) 542, 765, 1221
SfoI GGCGCC 1 cut(s) 580
Sfr274I CTCGAG 1 cut(s) 1260
SlaI CTCGAG 1 cut(s) 1260
SmiMI CAYNNNNRTG 2 cut(s) 45, 909
SmlI CTYRAG 6 cut(s) 43, 656, 783, 945, 982, 1260
SmoI CTYRAG 6 cut(s) 43, 656, 783, 945, 982, 1260
SsiI CCGC 2 cut(s) 168, 372
SspDI GGCGCC 1 cut(s) 578
SspMI CTAG 3 cut(s) 584, 969, 1324
StyD4I CCNGG 2 cut(s) 270, 771
StyI CCWWGG 1 cut(s) 990
TaaI ACNGT 4 cut(s) 67, 740, 941, 1019
TaiI ACGT 1 cut(s) 1002
TaqI TCGA 2 cut(s) 524, 1261
TatI WGTACW 2 cut(s) 718, 1008
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 3 cut(s) 206, 808, 1099
Tru1I TTAA 6 cut(s) 77, 126, 180, 831, 855, 1053
Tru9I TTAA 6 cut(s) 77, 126, 180, 831, 855, 1053
TscAI CASTG 3 cut(s) 70, 1167, 1215
TseFI GTSAC 2 cut(s) 391, 1276
TseI GCWGC 6 cut(s) 276, 337, 369, 413, 445, 629
Tsp45I GTSAC 2 cut(s) 391, 1276
TspDTI ATGAA 5 cut(s) 105, 494, 611, 738, 897
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 3 cut(s) 70, 1167, 1215
VspI ATTAAT 1 cut(s) 831
XapI RAATTY 3 cut(s) 298, 493, 725
XceI RCATGY 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 1260
XspI CTAG 3 cut(s) 584, 969, 1324
ZrmI AGTACT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.